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Manual fMRI Post-Processing QC

0 Shared Subjects

Manual fMRI post-processing QC
Neurosignal Recordings
Evaluated Data
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Query Element Name Data Type Size Required Description Value Range Notes Aliases
subjectkey GUID Required The NDAR Global Unique Identifier (GUID) for research subject NDAR*
src_subject_id String 20 Required Subject ID how it's defined in lab/project
interview_date Date Required Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY
interview_age Integer Required Age in months at the time of the interview/test/sampling/imaging. 0 :: 1260 Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.
sex String 20 Required Sex of subject at birth M;F; O; NR M = Male; F = Female; O=Other; NR = Not reported gender
eventname String 60 Required The event name for which the data was collected
Query visit String 60 Recommended Visit name fmri_manu_postqc_visitid, fmri_postqc_visitid
fmri_postqc_containertype String 30 Recommended Container type fmri_manu_postqc_containertype
fmri_postqc_stype String 30 Recommended Series type fmri_manu_postqc_stype
fmri_postqc_nrev Integer Recommended Number of reviews 0 :: 4 fmri_manu_postqc_nrev
fmri_postqc_revdisp Integer Recommended Disparity between reviewers 0;1 0 = reject; 1 = accept fmri_manu_postqc_revdisp
fmri_postqc_qc Float Recommended Overall QC score 0;1 0 = no disparity; 1 = disparity between raters fmri_manu_postqc_qc
fmri_postqc_regt1 Float Recommended Registration error score (0=good registration, 1=mild rotation or translation, 2=moderate rotation or translation, 3=severe rotation or translation) 0 :: 3 0 = absent; 1 = mild; 2 = moderate; 3 = severe fmri_manu_postqc_regt1
fmri_postqc_b0warp Float Recommended Residual distortion score (0=no distortion, 1=mild distortion, 2=moderate distortion, 3=severe distortion) 0 :: 3 0 = absent; 1 = mild; 2 = moderate; 3 = severe fmri_manu_postqc_b0warp
fmri_postqc_imgqual Float Recommended Image quality score (0=good image quality, 1=mild artifact, 2=moderate artifact, 3=severe artifact) 0 :: 3 0 = absent; 1 = mild; 2 = moderate; 3 = severe fmri_manu_postqc_imgqual
fmri_postqc_cutoff Float Recommended Cutoff score (0=no cutoff, 1=mild cutoff, 2=moderate cutoff, 3=severe cutoff) 0 :: 3 0 = absent; 1 = mild; 2 = moderate; 3 = severe fmri_manu_postqc_cutoff
fmri_postqc_notes String 1,000 Recommended fMRI postprocessing QC Notes
Data Structure

This page displays the data structure defined for the measure identified in the title and structure short name. The table below displays a list of data elements in this structure (also called variables) and the following information:

  • Element Name: This is the standard element name
  • Data Type: Which type of data this element is, e.g. String, Float, File location.
  • Size: If applicable, the character limit of this element
  • Required: This column displays whether the element is Required for valid submissions, Recommended for valid submissions, Conditional on other elements, or Optional
  • Description: A basic description
  • Value Range: Which values can appear validly in this element (case sensitive for strings)
  • Notes: Expanded description or notes on coding of values
  • Aliases: A list of currently supported Aliases (alternate element names)
  • For valid elements with shared data, on the far left is a Filter button you can use to view a summary of shared data for that element and apply a query filter to your Cart based on selected value ranges

At the top of this page you can also:

  • Use the search bar to filter the elements displayed. This will not filter on the Size of Required columns
  • Download a copy of this definition in CSV format
  • Download a blank CSV submission template prepopulated with the correct structure header rows ready to fill with subject records and upload

Please email the The NDA Help Desk with any questions.