|
subjectkey |
GUID |
|
Required |
The NDAR Global Unique Identifier (GUID) for research subject |
NDAR*
|
|
|
Query
|
experiment_id |
Integer |
|
Required |
ID for the Experiment/settings/run |
|
|
genom_experiment_id |
|
src_subject_id |
String |
20
|
Required |
Subject ID how it's defined in lab/project |
|
|
|
|
interview_age |
Integer |
|
Required |
Age in months at the time of the interview/test/sampling/imaging. |
0 :: 1260
|
Age is rounded to chronological month. If the research participant is 15-days-old at time of interview, the appropriate value would be 0 months. If the participant is 16-days-old, the value would be 1 month.
|
|
|
interview_date |
Date |
|
Required |
Date on which the interview/genetic test/sampling/imaging/biospecimen was completed. MM/DD/YYYY |
|
|
|
Query
|
sample_description |
String |
3,500
|
Required |
Sample description: tissue type, i.e. blood, saliva, brain etc. |
whole blood; saliva; brain; urine; serum; plasma; CSF; IPS; Fibroblast; Neuronal Progenitor; skin biopsy; temporal cortex; lymphoblastoid cell line; unknown; semen; frontal cortex; parietal cortex; basal ganglia; Placenta; hair; occipital visual cortex; cerebellum; spleen; stool; muscle; kidney; liver; heart; cord blood; nasal swab; DNA; RNA; breastmilk; buccal
|
|
genom_sample_description |
|
sample_id_original |
String |
100
|
Required |
Original, user-defined Sample ID |
|
|
genom_sample_id_original |
Query
|
organism |
String |
50
|
Required |
Organism |
|
|
genom_organism |
Query
|
sample_amount |
Float |
|
Required |
Sample amount |
|
|
genom_sample_amount |
Query
|
sample_unit |
String |
50
|
Required |
Measurement unit for Sample |
|
|
genom_sample_unit |
|
data_code |
String |
100
|
Recommended |
Comments about experiment details |
|
|
|
Query
|
data_file1_type |
String |
300
|
Required |
type of data file 1 |
|
|
genom_data_file1_type |
|
data_file1 |
File |
255
|
Required |
Data file 1 |
|
|
genom_data_file1 |
|
data_file2_type |
String |
100
|
Recommended |
data file 2 type/description |
|
|
|
|
data_file2 |
File |
255
|
Recommended |
data file 2 |
|
|
|
|
data_file3 |
File |
255
|
Recommended |
Data file 3 |
|
|
|
Query
|
data_file3_type |
String |
100
|
Recommended |
Data file 3 type |
|
|
|
|
data_file4 |
File |
255
|
Recommended |
Data file 4 |
|
|
|
Query
|
data_file4_type |
String |
100
|
Recommended |
Data file 4 type |
|
|
|
Query
|
storage_protocol |
String |
255
|
Required |
Description of Storage Protocol |
|
|
genom_storage_protocol |
Query
|
data_file_location |
String |
50
|
Required |
dbGaP; NDAR; NIMH Genetics; AGRE; Sfari; Proteomics DB name |
|
|
genom_data_file_location |
Query
|
biorepository |
String |
100
|
Required |
Sample provider: i.e. NIMH_Genetics; ATP; Correil |
|
|
genom_biorepository |
|
patient_id_biorepository |
String |
100
|
Required |
Biorepository Patient ID |
|
|
genom_patient_id_biorepository |
|
sample_id_biorepository |
String |
100
|
Required |
Biorepository Sample ID |
|
|
genom_sample_id_biorepository |
|
cell_id_original |
String |
100
|
Recommended |
Original, user-defined cell line ID |
|
|
|
|
cell_id_biorepository |
String |
100
|
Recommended |
Biorepository cell line ID |
|
|
|
|
comments_misc |
String |
4,000
|
Recommended |
Miscellaneous comments on study, interview, methodology relevant to this form data |
|
|
|
Query
|
site |
String |
101
|
Recommended |
Site |
|
Study Site
|
|
Query
|
rat280 |
Float |
|
Recommended |
Ratio of absorbance at 260nm and 280nm |
|
|
|
Query
|
rat230 |
Float |
|
Recommended |
Ratio of absorbance at 260nm and 230nm |
|
|
|
Query
|
gqn |
Float |
|
Recommended |
genomic DNA quality number |
|
|
|
|
seq_batch |
Date |
|
Recommended |
Sequencing batch: Date sent to sequencing facility |
|
|
|
|
eventname |
String |
60
|
Recommended |
The event name for which the data was collected |
|
|
|
|
sex |
String |
20
|
Required |
Sex of subject at birth |
M;F; O; NR
|
M = Male; F = Female; O=Other; NR = Not reported
|
gender |
|
assay_marker |
String |
255
|
Recommended |
Antibody used against histone protein in order to immuno-precipitate the chromatin |
|
|
|
|
flowcell_given_to_core |
String |
255
|
Recommended |
Flowcell identifier |
|
|
|
|
flowcell_2 |
String |
255
|
Recommended |
CMC_HBCC-specific flowcell identifier |
|
|
|
|
flowcell_name |
String |
255
|
Recommended |
flowcell identifier |
|
|
|
|
flowcell_name_2 |
String |
255
|
Recommended |
CMC_HBCC-specific flowcell name |
|
|
|
|
flowcell_lane_a |
String |
255
|
Recommended |
Flowcell lane |
|
|
|
|
flowcell_lane_b |
String |
255
|
Recommended |
Flowcell lane |
|
|
|
|
flowcell_id |
String |
255
|
Recommended |
Flowcell identifier |
|
multiple flowcells separated by ::
|
|
|
lane_id |
String |
255
|
Recommended |
Flowcell lane identifier |
|
|
|
|
array_chip_platform |
String |
255
|
Recommended |
Name of genotyping array chip used |
|
|
|
|
array_chip_version |
String |
255
|
Recommended |
Version of genotyping array chip used |
|
|
|
|
brain_rin |
Float |
|
Recommended |
RNA integrity number |
|
|
|
|
rine |
Float |
|
Recommended |
RIN equivalent (RINe) value for assigning integrity values to RNA |
|
|
|
|
source_tissue |
String |
255
|
Recommended |
Brain tissue used to isolate the DNA/RNA i.e. |
ACC; DLPFC; CER; dACC; STG; Dura; Hippo; Caudate; Olfactory mucosa cells
|
anterior cingulate cortex (ACC); dorsal anterior cingulate cortex (dACC); dorsolateral prefrontal cortex (DLPFC); cerebellum (CER); superior temporal gyrus (STG); Dura mater (Dura); Hippocampus (Hippo); Caudate nucleus (Caudate); Olfactory mucosa cells
|
|
|
sample_prep_batch |
String |
255
|
Recommended |
Sample preparation batch OR DNA/RNA Isolation batch OR experimental batch |
|
|
|
|
total_rna_dna |
Float |
|
Recommended |
Total RNA (micrograms) OR Total DNA (micrograms) |
|
|
|
|
library_prep_batch |
String |
255
|
Recommended |
Sequencing library batch |
|
|
|
|
ribozero_batch |
String |
255
|
Recommended |
Ribozero treatment batch |
|
|
|
|
sequencing_batch |
String |
255
|
Recommended |
Sequencing batch |
|
|
|
|
flowcell_batch |
String |
255
|
Recommended |
Multiplex batch |
|
|
|
|
inventory_code |
String |
50
|
Recommended |
Paxgene RNA tube inventory code |
|
|
|
|
chipwell_id |
String |
101
|
Recommended |
Chipwell barcode |
|
|
|
|
timepoint_label |
String |
50
|
Recommended |
Timepoint/visit label |
|
|
|
|
fetal_age |
Integer |
|
Recommended |
Age of the fetus (i.e., gestational age) in days |
0::322
|
|
|
|
fetal_age_type |
Integer |
|
Recommended |
Type of gestational age used for fetal_age |
1;2
|
1 = Postovulatory gestational age, defined as days since the last ovulation, expected term of 266 days; 2 = Postmenstrual gestational age, days since the last menstrual period, expected term of 280 days
|
|