NIMH Data Archive - Data

Genomics

Neuroimaging

Phenotype¹

New Trial
Clinical Trial

¹ Numbers reported are subjects by age

New Project
Grant/Project Number

Format should be in the following format: Activity Code, Institute Abbreviation, and Serial Number. Grant Type, Support Year, and Suffix should be excluded. For example, grant 1R01MH123456-01A1 should be entered R01MH123456

Collection - Use Existing Experiment

To associate an experiment to the current collection, just select an axperiment from the table below then click the associate experiment button to persist your changes (saving the collection is not required). Note that once an experiment has been associated to two or more collections, the experiment will not longer be editable.

The table search feature is case insensitive and targets the experiment id, experiment name and experiment type columns. The experiment id is searched only when the search term entered is a number, and filtered using a startsWith comparison. When the search term is not numeric the experiment name is used to filter the results.

Select	Experiment Id	Experiment Name	Experiment Type	Created On

24	HI-NGS_R1	Omics	02/16/2011
475	MB1-10 (CHOP)	Omics	06/07/2016
490	Illumina Infinium PsychArray BeadChip Assay	Omics	07/07/2016
501	PharmacoBOLD Resting State	fMRI	07/27/2016
506	PVPREF	Omics	08/05/2016
509	ABC-CT Resting v2	EEG	08/18/2016
13	Comparison of FI expression in Autistic and Neurotypical Homo Sapiens	Omics	12/28/2010
18	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	01/06/2011
22	Stitching PCR Sequencing	Omics	02/14/2011
26	ASD_Methylation	Omics	03/01/2011
29	Microarray family 03 (father, mother, sibling)	Omics	03/24/2011
37	Standard paired-end sequencing of BCRs	Omics	04/19/2011
38	Illumina Mate-Pair BCR sequencing	Omics	04/19/2011
39	Custom Jumping Libraries	Omics	04/19/2011
40	Custom CapBP	Omics	04/19/2011
41	Immunofluorescence	Omics	05/11/2011
43	Autism brain sample genotyping, Illumina	Omics	05/16/2011
47	ARRA Autism Sequencing Collaboration at Baylor. SOLiD 4 System	Omics	08/01/2011
53	AGRE Omni1-quad	Omics	10/11/2011
59	AGP genotyping	Omics	04/03/2012
60	Ultradeep 454 sequencing of synaptic genes from postmortem cerebella of individuals with ASD and neurotypical controls	Omics	06/23/2012
63	Microemulsion PCR and Targeted Resequencing for Variant Detection in ASD	Omics	07/20/2012
76	Whole Genome Sequencing in Autism Families	Omics	01/03/2013
519	Resting	fMRI	11/08/2016
90	Genotyped IAN Samples	Omics	07/09/2013
91	NJLAGS Axiom Genotyping Array	Omics	07/16/2013
93	AGP genotyping (CNV)	Omics	09/06/2013
106	Longitudinal Sleep Study. H20 200. Channel set 2	EEG	11/07/2013
107	Longitudinal Sleep Study. H20 200. Channel set 3	EEG	11/07/2013
108	Longitudinal Sleep Study. AURA 200	EEG	11/07/2013
105	Longitudinal Sleep Study. H20 200. Channel set 1	EEG	11/07/2013
109	Longitudinal Sleep Study. AURA 400	EEG	11/07/2013
116	Gene Expression Analysis WG-6	Omics	01/07/2014
131	Jeste Lab UCLA ACEii: Charlie Brown and Sesame Street - Project 1	Eye Tracking	02/27/2014
132	Jeste Lab UCLA ACEii: Animacy - Project 1	Eye Tracking	02/27/2014
133	Jeste Lab UCLA ACEii: Mom Stranger - Project 2	Eye Tracking	02/27/2014
134	Jeste Lab UCLA ACEii: Face Emotion - Project 3	Eye Tracking	02/27/2014
145	AGRE/FMR1_Illumina.JHU	Omics	04/14/2014
146	AGRE/MECP2_Sanger.JHU	Omics	04/14/2014
147	AGRE/MECP2_Junior.JHU	Omics	04/14/2014
151	Candidate Gene Identification in familial Autism	Omics	06/09/2014
152	NJLAGS Whole Genome Sequencing	Omics	07/01/2014
154	Math Autism Study - Vinod Menon	fMRI	07/15/2014
155	Resting	fMRI	07/25/2014
156	Speech	fMRI	07/25/2014
159	Emotion	fMRI	07/25/2014
160	syllable contrast	EEG	07/29/2014
167	School-age naturalistic stimuli	Eye Tracking	09/19/2014
44	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	06/27/2011
45	Exome Sequencing of 20 Sporadic Cases of Autism Spectrum Disorder	Omics	07/15/2011

Collection - Add Experiment

Add Supporting Documentation

Funding Source:
URL:

To add an existing Data Structure, enter its title in the search bar. If you need to request changes, select the indicator "No, it requires changes to meet research needs" after selecting the Structure, and upload the file with the request changes specific to the selected Data Structure. Your file should follow the Request Changes Procedure. If the Data Structure does not exist, select "Request New Data Structure" and upload the appropriate zip file.

Use/Modify Existing Data Structure

Request New Data Structure

Targeted Enrollment:

Initial Submission Date:

Initial Share Date:

Data Structure Search:

Data Structures:

Submit

Request Submission Exemption

Not Eligible

The Data Expected list for this Collection shows some raw data as missing. Contact the NDA Help Desk with any questions.

Please confirm that you will not be enrolling any more subjects and that all raw data has been collected and submitted.

Collection Updated

Your Collection is now in Data Analysis phase and exempt from biannual submissions. Analyzed data is still expected prior to publication or no later than the project end date.

[CMS] Error

[CMS]

Unable to change collection phase where targeted enrollment is less than 90%

You have requested to move the sharing dates for the following assessments:

Data Expected Item	Original Sharing Date	New Sharing Date

Please provide a reason for this change, which will be sent to the Program Officers listed within this collection:

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CommonMind Consortium #5063

General
Experiments (7)
Shared Data
Publications (273)
Data Expected (6)
Associated Studies (0)

Collection Title	Collection Investigators	Collection Description
Collection Title:	CommonMind Consortium
Collection Investigators:	Panos Roussos
Collection Description:	The CommonMind Consortium is a Public-Private Pre-Competitive partnership that brings together disease area expertise, large scale and well curated brain sample collections, and data management and analysis expertise. The CMC has as a goal to generate and analyze large scale data from human subjects with neuropsychiatric disorders and to make this data and the analytical results broadly available to the public as a free resource. We welcome participation in our data generation efforts through funding, or “in kind” data or samples. A modular design will be used to expand scope according to funding and data will be released one year after generation. A central tenet is that biological insights stemming from integrative genomic analysis are most compelling when they leverage the expertise across multiple disciplines and provide a transparent, reproducible description of analytical process. As such, the consortium has committed to making all data, analytical results, and methodological source code available to the public. The goal of this is to provide the opportunity for researchers to assess the quality of the data and results in order to (1) estimate the likelihood of our biological conclusions and (2) determine the most meaningful way of incorporating these findings into their own research.
Data Repository:	NIMH Data Archive
Permission Group:
Collection Creation Date:	09/26/2023
Collection Phase:	Funding Completed
Collection Sub-Phase:	Close Out
Blinded Clinical Trial:	No
Total Funded Amount:	$18,723,406.00
Subjects Shared:	1,098

{"values":[]}

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Funding Sources:

Funding Source Name	Funding Source URL
NIH - Contract	None
NIH - Extramural	None

Supporting Documentation:

File Name	File Type	Description	Audience
Sex-specific_gene_expression_analysis_on_CommonMind_data.zip	Other	"Sex-specific gene expression analysis on CommonMind data [PMID:34154796]"	Qualified Researchers
Cell-type_imputation_of_CommonMind_data.zip	Other	"Cell-type imputation of CommonMind data [PMID:37904203]"	Qualified Researchers

Grant Information:

Project Number	Project Title	Start Date	End Date	Planned Enrollment	Actual Enrollment	Organization	Funds Obligated
R37MH057881-16	Genetics association in schizophrenia and other disorders	06/01/2013	05/31/2018	Not Reported	Not Reported	UNIVERSITY OF PITTSBURGH AT PITTSBURGH	$934,553.00
U01MH103392-01	Cis-Regulatory Epigenome Mappings in Schizophrenia	06/15/2014	05/31/2017	Not Reported	Not Reported	ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI	$1,830,695.00
R01MH109897-01	Integrated Multiscale Networks in Schizophrenia	05/01/2016	02/28/2021	Not Reported	Not Reported	ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI	$2,322,945.00
R01MH109677-01	Risk genetic variants and cis regulation of gene expression in Bipolar Disorder	08/01/2016	05/31/2021	Not Reported	Not Reported	ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI	$2,617,098.00
R01MH110921-01	Molecular Profiling of Schizophrenia	09/01/2016	12/31/2020	Not Reported	Not Reported	ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI	$5,122,345.00
U01MH116442-01	The 3D genome in transcriptional regulation across the postnatal life span, with implications for schizophrenia and bipolar disorder	09/01/2018	05/31/2024	Not Reported	Not Reported	ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI	$5,895,770.00

Clinical Trials:

helpcenter.collection.general-tab

Collection - General Tab

Fields available for edit on the top portion of the page include:

Collection Title
Investigators
Collection Description
Collection Phase
Funding Source
Clinical Trials

Collection Phase: The current status of a research project submitting data to an NDA Collection, based on the timing of the award and/or the data that have been submitted.

Pre-Enrollment: The default entry made when the NDA Collection is created.
Enrolling: Data have been submitted to the NDA Collection or the NDA Data Expected initial submission date has been reached for at least one data structure category in the NDA Collection.
Data Analysis: Subject level data collection for the research project is completed and has been submitted to the NDA Collection. The NDA Collection owner or the NDA Help Desk may set this phase when they’ve confirmed data submission is complete and submitted subject counts match at least 90% of the target enrollment numbers in the NDA Data Expected. Data submission reminders will be turned off for the NDA Collection.
Funding Completed: The NIH grant award (or awards) associated with the NDA Collection has reached its end date. NDA Collections in Funding Completed phase are assigned a subphase to indicate the status of data submission.
- The Data Expected Subphase indicates that NDA expects more data will be submitted
- The Closeout Subphase indicates the data submission is complete.
- The Sharing Not Met Subphase indicates that data submission was not completed as expected.

Blinded Clinical Trial Status:

This status is set by a Collection Owner and indicates the research project is a double blinded clinical trial. When selected, the public view of Data Expected will show the Data Expected items and the Submission Dates, but the targeted enrollment and subjects submitted counts will not be displayed.
Targeted enrollment and subjects submitted counts are visible only to NDA Administrators and to the NDA Collection or as the NDA Collection Owner.
When an NDA Collection that is flagged Blinded Clinical Trial reaches the maximum data sharing date for that Data Repository (see https://nda.nih.gov/nda/sharing-regimen.html), the embargo on Data Expected information is released.

Funding Source

The organization(s) responsible for providing the funding is listed here.

Supporting Documentation

Users with Submission privileges, as well as Collection Owners, Program Officers, and those with Administrator privileges, may upload and attach supporting documentation. By default, supporting documentation is shared to the general public, however, the option is also available to limit this information to qualified researchers only.

Grant Information

Identifiable details are displayed about the Project of which the Collection was derived from. You may click in the Project Number to view a full report of the Project captured by the NIH.

Clinical Trials

Any data that is collected to support or further the research of clinical studies will be available here. Collection Owners and those with Administrator privileges may add new clinical trials.

Frequently Asked Questions

How does the NIMH Data Archive (NDA) determine which Permission Group data are submitted into?

During Collection creation, NDA staff determine the appropriate Permission Group based on the type of data to be submitted, the type of access that will be available to data access users, and the information provided by the Program Officer during grant award.
How do I know when a NDA Collection has been created?

When a Collection is created by NDA staff, an email notification will automatically be sent to the PI(s) of the grant(s) associated with the Collection to notify them.
Is a single grant number ever associated with more than one Collection?

The NDA system does not allow for a single grant to be associated with more than one Collection; therefore, a single grant will not be listed in the Grant Information section of a Collection for more than one Collection.
Why is there sometimes more than one grant included in a Collection?

In general, each Collection is associated with only one grant; however, multiple grants may be associated if the grant has multiple competing segments for the same grant number or if multiple different grants are all working on the same project and it makes sense to hold the data in one Collection (e.g., Cooperative Agreements).

Glossary

Administrator Privilege

A privilege provided to a user associated with an NDA Collection or NDA Study whereby that user can perform a full range of actions including providing privileges to other users.
Collection Owner

Generally, the Collection Owner is the contact PI listed on a grant. Only one NDA user is listed as the Collection owner. Most automated emails are primarily sent to the Collection Owner.
Collection Phase
The Collection Phase provides information on data submission as opposed to grant/project completion so while the Collection phase and grant/project phase may be closely related they are often different. Collection users with Administrative Privileges are encouraged to edit the Collection Phase. The Program Officer as listed in eRA (for NIH funded grants) may also edit this field. Changes must be saved by clicking the Save button at the bottom of the page. This field is sortable alphabetically in ascending or descending order. Collection Phase options include:
- Pre-Enrollment: A grant/project has started, but has not yet enrolled subjects.
- Enrolling: A grant/project has begun enrolling subjects. Data submission is likely ongoing at this point.
- Data Analysis: A grant/project has completed enrolling subjects and has completed all data submissions.
- Funding Completed: A grant/project has reached the project end date.
Collection Title

An editable field with the title of the Collection, which is often the title of the grant associated with the Collection.
Grant

Provides the grant number(s) for the grant(s) associated with the Collection. The field is a hyperlink so clicking on the Grant number will direct the user to the grant information in the NIH Research Portfolio Online Reporting Tools (RePORT) page.
Supporting Documentation

Various documents and materials to enable efficient use of the data by investigators unfamiliar with the project and may include the research protocol, questionnaires, and study manuals.
NIH Research Initiative

NDA Collections may be organized by scientific similarity into NIH Research Initiatives, to facilitate query tool user experience. NIH Research Initiatives map to one or multiple Funding Opportunity Announcements.
Permission Group

Access to shared record-level data in NDA is provisioned at the level of a Permission Group. NDA Permission Groups consist of one or multiple NDA Collections that contain data with the same subject consents.
Planned Enrollment

Number of human subject participants to be enrolled in an NIH-funded clinical research study. The data is provided in competing applications and annual progress reports.
Actual Enrollment

Number of human subjects enrolled in an NIH-funded clinical research study. The data is provided in annual progress reports.
NDA Collection

A virtual container and organization structure for data and associated documentation from one grant or one large project/consortium. It contains tools for tracking data submission and allows investigators to define a wide array of other elements that provide context for the data, including all general information regarding the data and source project, experimental parameters used to collect any event-based data contained in the Collection, methods, and other supporting documentation. They also allow investigators to link underlying data to an NDA Study, defining populations and subpopulations specific to research aims.
Data Use Limitations

Data Use Limitations (DULs) describe the appropriate secondary use of a dataset and are based on the original informed consent of a research participant. NDA only accepts consent-based data use limitations defined by the NIH Office of Science Policy.
Total Subjects Shared

The total number of unique subjects for whom data have been shared and are available for users with permission to access data.

Contact NDA Help Desk

ID	Name	Created Date	Status	Type
2524	rnaSeq_CMC	03/06/2024	Approved	Omics
2525	scrnaSeq_CMC	03/06/2024	Approved	Omics
2581	ATACSeq_CMC_Controlled	03/07/2024	Approved	Omics
2582	ATACSeq_CMC_Open	03/07/2024	Approved	Omics
2585	RNASeq_CMC_Controlled	03/14/2024	Approved	Omics
2586	RNASeq_CMC_Open	03/14/2024	Approved	Omics
2588	SNP_CMC_Controlled	03/15/2024	Approved	Omics

helpcenter.collection.experiments-tab

Collection - Experiments

The number of Experiments included is displayed in parentheses next to the tab name. You may download all experiments associated with the Collection via the Download button. You may view individual experiments by clicking the Experiment Name and add them to the Filter Cart via the Add to Cart button.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may create or edit an Experiment.

Please note: The creation of an NDA Experiment does not necessarily mean that data collected, according to the defined Experiment, has been submitted or shared.

Frequently Asked Questions

Can an Experiment be associated with more than one Collection?
Yes -see the “Copy” button in the bottom left when viewing an experiment. There are two actions that can be performed via this button:
1. Copy the experiment with intent for modifications.
2. Associate the experiment to the collection. No modifications can be made to the experiment.

Glossary

Experiment Status

An Experiment must be Approved before data using the associated Experiment_ID may be uploaded.
Experiment ID

The ID number automatically generated by NDA which must be included in the appropriate file when uploading data to link the Experiment Definition to the subject record.

Contact NDA Help Desk

Shared Data:

Title	Type	Number of Subjects
ATAC Sequencing	Genomics	269
PsychENCODE/Common Mind Summary	Clinical Assessments	1084
RNA Sequencing	Genomics	1014
SNP Array	Genomics	1076
Whole Genome Sequencing	Genomics	773

helpcenter.collection.shared-data-tab

Collection - Shared Data

This tab provides a quick overview of the Data Structure title, Data Type, and Number of Subjects that are currently Shared for the Collection. The information presented in this tab is automatically generated by NDA and cannot be edited. If no information is visible on this tab, this would indicate the Collection does not have shared data or the data is private.

The shared data is available to other researchers who have permission to access data in the Collection's designated Permission Group(s). Use the Download button to get all shared data from the Collection to the Filter Cart.

Frequently Asked Questions

How will I know if another researcher uses data that I shared through the NIMH Data Archive (NDA)?

To see what data your project have submitted are being used by a study, simply go the Associated Studies tab of your collection. Alternatively, you may review an NDA Study Attribution Report available on the General tab.
Can I get a supplement to share data from a completed research project?

Often it becomes more difficult to organize and format data electronically after the project has been completed and the information needed to create a GUID may not be available; however, you may still contact a program staff member at the appropriate funding institution for more information.
Can I get a supplement to share data from a research project that is still ongoing?

Unlike completed projects where researchers may not have the information needed to create a GUID and/or where the effort needed to organize and format data becomes prohibitive, ongoing projects have more of an opportunity to overcome these challenges. Please contact a program staff member at the appropriate funding institution for more information.

Glossary

Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Type

A grouping of data by similar characteristics such as Clinical Assessments, Omics, or Neurosignal data.
Shared

The term 'Shared' generally means available to others; however, there are some slightly different meanings based on what is Shared. A Shared NDA Study is viewable and searchable publicly regardless of the user's role or whether the user has an NDA account. A Shared NDA Study does not necessarily mean that data used in the NDA Study have been shared as this is independently determined. Data are shared according the schedule defined in a Collection's Data Expected Tab and/or in accordance with data sharing expectations in the NDA Data Sharing Terms and Conditions. Additionally, Supporting Documentation uploaded to a Collection may be shared independent of whether data are shared.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Publications

Publications relevant to NDA data are listed below. Most displayed publications have been associated with the grant within Pubmed. Use the "+ New Publication" button to add new publications. Publications relevant/not relevant to data expected are categorized. Relevant publications are then linked to the underlying data by selecting the Create Study link. Study provides the ability to define cohorts, assign subjects, define outcome measures and lists the study type, data analysis and results. Analyzed data and results are expected in this way.

PubMed ID	Study	Title	Journal	Authors	Date	Status
39658624	Create Study	Neuropsychiatric polygenic scores are weak predictors of professional categories.	Nature human behaviour	Voloudakis, Georgios; Therrien, Karen; Tomasi, Simone; Rajagopal, Veera M; Choi, Shing Wan; Demontis, Ditte; Fullard, John F; Børglum, Anders D; O'Reilly, Paul F; Hoffman, Gabriel E; Roussos, Panos	December 10, 2024	Not Determined
39578476	Create Study	A multi-regional human brain atlas of chromatin accessibility and gene expression facilitates promoter-isoform resolution genetic fine-mapping.	Nature communications	Dong, Pengfei; Song, Liting; Bendl, Jaroslav; Misir, Ruth; Shao, Zhiping; Edelstien, Jonathan; Davis, David A; Haroutunian, Vahram; Scott, William K; Acker, Susanne; Lawless, Nathan; Hoffman, Gabriel E; Fullard, John F; Roussos, Panos	November 22, 2024	Not Determined
39353437	Create Study	Detection and analysis of complex structural variation in human genomes across populations and in brains of donors with psychiatric disorders.	Cell	Zhou, Bo; Arthur, Joseph G; Guo, Hanmin; Kim, Taeyoung; Huang, Yiling; Pattni, Reenal; Wang, Tao; Kundu, Soumya; Luo, Jay X J; Lee, HoJoon; Nachun, Daniel C; Purmann, Carolin; Monte, Emma M; Weimer, Annika K; Qu, Ping-Ping; Shi, Minyi; Jiang, Lixia; Yang, Xinqiong; Fullard, John F; Bendl, Jaroslav; Girdhar, Kiran; Kim, Minsu; Chen, Xi; PsychENCODE Consortium; Greenleaf, William J; Duncan, Laramie; Ji, Hanlee P; Zhu, Xiang; Song, Giltae; Montgomery, Stephen B; Palejev, Dean; Zu Dohna, Heinrich; Roussos, Panos; Kundaje, Anshul; Hallmayer, Joachim F; Snyder, Michael P; Wong, Wing H; Urban, Alexander E	November 14, 2024	Not Determined
39282424	Create Study	Oxygen-induced stress reveals context-specific gene regulatory effects in human brain organoids.	bioRxiv : the preprint server for biology	Umans, Benjamin D; Gilad, Yoav	September 3, 2024	Not Determined
39252912	Create Study	Biological Insights from Schizophrenia-associated Loci in Ancestral Populations.	medRxiv : the preprint server for health sciences	Bigdeli, Tim B; Chatzinakos, Chris; Bendl, Jaroslav; Barr, Peter B; Venkatesh, Sanan; Gorman, Bryan R; Clarence, Tereza; Genovese, Giulio; Iyegbe, Conrad O; Peterson, Roseann E; Kolokotronis, Sergios-Orestis; Burstein, David; Meyers, Jacquelyn L; Li, Yuli; Rajeevan, Nallakkandi; Sayward, Frederick; Cheung, Kei-Hoi; Project Among African-Americans to Explore Risks for Schizophrenia (PAARTNERS); Consortium on the Genomics of Schizophrenia (COGS); Genomic Psychiatry Cohort (GPC) Investigators; DeLisi, Lynn E; Kosten, Thomas R; Zhao, Hongyu; Achtyes, Eric; Buckley, Peter; Malaspina, Dolores; Lehrer, Douglas; Rapaport, Mark H; Braff, David L; Pato, Michele T; Fanous, Ayman H; Pato, Carlos N; PsychAD Consortium; Cooperative Studies Program (CSP) #572; Million Veteran Program (MVP); Huang, Grant D; Muralidhar, Sumitra; Michael Gaziano, J; Pyarajan, Saiju; Girdhar, Kiran; Lee, Donghoon; Hoffman, Gabriel E; Aslan, Mihaela; Fullard, John F; Voloudakis, Georgios; Harvey, Philip D; Roussos, Panos	August 28, 2024	Not Determined
39141354	Create Study	Genetic mechanisms for impaired synaptic plasticity in schizophrenia revealed by computational modeling.	Proceedings of the National Academy of Sciences of the United States of America	Mäki-Marttunen, Tuomo; Blackwell, Kim T; Akkouh, Ibrahim; Shadrin, Alexey; Valstad, Mathias; Elvsåshagen, Torbjørn; Linne, Marja-Leena; Djurovic, Srdjan; Einevoll, Gaute T; Andreassen, Ole A	August 20, 2024	Not Determined
39026810	Create Study	Dynamic stress- and inflammatory-based regulation of psychiatric risk loci in human neurons.	bioRxiv : the preprint server for biology	Retallick-Townsley, Kayla G; Lee, Seoyeon; Cartwright, Sam; Cohen, Sophie; Sen, Annabel; Jia, Meng; Young, Hannah; Dobbyn, Lee; Deans, Michael; Fernandez-Garcia, Meilin; Huckins, Laura M; Brennand, Kristen J	July 9, 2024	Not Determined
38951512	Create Study	Distinct genetic liability profiles define clinically relevant patient strata across common diseases.	Nature communications	Trastulla, Lucia; Dolgalev, Georgii; Moser, Sylvain; Jiménez-Barrón, Laura T; Andlauer, Till F M; von Scheidt, Moritz; Schizophrenia Working Group of the Psychiatric Genomics Consortium; Budde, Monika; Heilbronner, Urs; Papiol, Sergi; Teumer, Alexander; Homuth, Georg; Völzke, Henry; Dörr, Marcus; Falkai, Peter; Schulze, Thomas G; Gagneur, Julien; Iorio, Francesco; Müller-Myhsok, Bertram; Schunkert, Heribert; Ziller, Michael J	July 1, 2024	Not Determined
38913688	Create Study	The Human Developing Cerebral Cortex Is Characterized by an Elevated De Novo Expression of Long Noncoding RNAs in Excitatory Neurons.	Molecular biology and evolution	Morales-Vicente, David A; Tahira, Ana C; Woellner-Santos, Daisy; Amaral, Murilo S; Berzoti-Coelho, Maria G; Verjovski-Almeida, Sergio	July 3, 2024	Not Determined
38869147	Create Study	Unraveling NEK4 as a Potential Drug Target in Schizophrenia and Bipolar I Disorder: A Proteomic and Genomic Approach.	Schizophrenia bulletin	Zhang, Chengcheng; Yang, ZhiHui; Li, Xiaojing; Zhao, Liansheng; Guo, Wanjun; Deng, Wei; Wang, Qiang; Hu, Xun; Li, Ming; Sham, Pak Chung; Xiao, Xiao; Li, Tao	August 27, 2024	Not Determined
38790238	Create Study	Altered Expression of PDE4 Genes in Schizophrenia: Insights from a Brain and Blood Sample Meta-Analysis and iPSC-Derived Neurons.	Genes	Burrack, Nitzan; Yitzhaky, Assif; Mizrahi, Liron; Wang, Meiyan; Stern, Shani; Hertzberg, Libi	May 10, 2024	Not Determined
38781370	Create Study	A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex.	Science (New York, N.Y.)	Huuki-Myers, Louise A; Spangler, Abby; Eagles, Nicholas J; Montgomery, Kelsey D; Kwon, Sang Ho; Guo, Boyi; Grant-Peters, Melissa; Divecha, Heena R; Tippani, Madhavi; Sriworarat, Chaichontat; Nguyen, Annie B; Ravichandran, Prashanthi; Tran, Matthew N; Seyedian, Arta; PsychENCODE Consortium†; Hyde, Thomas M; Kleinman, Joel E; Battle, Alexis; Page, Stephanie C; Ryten, Mina; Hicks, Stephanie C; Martinowich, Keri; Collado-Torres, Leonardo; Maynard, Kristen R; PsychENCODE Consortium	May 24, 2024	Not Determined
38781369	Create Study	Single-cell genomics and regulatory networks for 388 human brains.	Science (New York, N.Y.)	Emani, Prashant S; Liu, Jason J; Clarke, Declan; Jensen, Matthew; Warrell, Jonathan; Gupta, Chirag; Meng, Ran; Lee, Che Yu; Xu, Siwei; Dursun, Cagatay; Lou, Shaoke; Chen, Yuhang; Chu, Zhiyuan; Galeev, Timur; Hwang, Ahyeon; Li, Yunyang; Ni, Pengyu; Zhou, Xiao; PsychENCODE Consortium‡; Bakken, Trygve E; Bendl, Jaroslav; Bicks, Lucy; Chatterjee, Tanima; Cheng, Lijun; Cheng, Yuyan; Dai, Yi; Duan, Ziheng; Flaherty, Mary; Fullard, John F; Gancz, Michael; Garrido-Martín, Diego; Gaynor-Gillett, Sophia; Grundman, Jennifer; Hawken, Natalie; Henry, Ella; Hoffman, Gabriel E; Huang, Ao; Jiang, Yunzhe; Jin, Ting; Jorstad, Nikolas L; Kawaguchi, Riki; Khullar, Saniya; Liu, Jianyin; Liu, Junhao; Liu, Shuang; Ma, Shaojie; Margolis, Michael; Mazariegos, Samantha; Moore, Jill; Moran, Jennifer R; Nguyen, Eric; Phalke, Nishigandha; Pjanic, Milos; Pratt, Henry; Quintero, Diana; Rajagopalan, Ananya S; Riesenmy, Tiernon R; Shedd, Nicole; Shi, Manman; Spector, Megan; Terwilliger, Rosemarie; Travaglini, Kyle J; Wamsley, Brie; Wang, Gaoyuan; Xia, Yan; Xiao, Shaohua; Yang, Andrew C; Zheng, Suchen; Gandal, Michael J; Lee, Donghoon; Lein, Ed S; Roussos, Panos; Sestan, Nenad; Weng, Zhiping; White, Kevin P; Won, Hyejung; Girgenti, Matthew J; Zhang, Jing; Wang, Daifeng; Geschwind, Daniel; Gerstein, Mark; PsychENCODE Consortium	May 24, 2024	Not Determined
38781336	Create Study	Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data.	Science advances	Dai, Rujia; Chu, Tianyao; Zhang, Ming; Wang, Xuan; Jourdon, Alexandre; Wu, Feinan; Mariani, Jessica; Vaccarino, Flora M; Lee, Donghoon; Fullard, John F; Hoffman, Gabriel E; Roussos, Panos; Wang, Yue; Wang, Xusheng; Pinto, Dalila; Wang, Sidney H; Zhang, Chunling; PsychENCODE consortium; Chen, Chao; Liu, Chunyu	May 24, 2024	Not Determined
38778015	Create Study	Integrating human endogenous retroviruses into transcriptome-wide association studies highlights novel risk factors for major psychiatric conditions.	Nature communications	Duarte, Rodrigo R R; Pain, Oliver; Bendall, Matthew L; de Mulder Rougvie, Miguel; Marston, Jez L; Selvackadunco, Sashika; Troakes, Claire; Leung, Szi Kay; Bamford, Rosemary A; Mill, Jonathan; O'Reilly, Paul F; Srivastava, Deepak P; Nixon, Douglas F; Powell, Timothy R	May 22, 2024	Not Determined
38754426	Create Study	An integrative framework to prioritize genes in more than 500 loci associated with body mass index.	American journal of human genetics	Hemerich, Daiane; Svenstrup, Victor; Obrero, Virginia Diez; Preuss, Michael; Moscati, Arden; Hirschhorn, Joel N; Loos, Ruth J F	June 6, 2024	Not Determined
38699304	Create Study	Contribution of autosomal rare and de novo variants to sex differences in autism.	medRxiv : the preprint server for health sciences	Koko, Mahmoud; Kyle Satterstrom, F; Autism Sequencing Consortium; APEX consortium; Warrier, Varun; Martin, Hilary	April 16, 2024	Not Determined
38645177	Create Study	Sex differences in brain cell-type specific chromatin accessibility in schizophrenia.	Research square	Roussos, Panos; Ma, Yixuan; Girdhar, Kiran; Hoffman, Gabriel; Fullard, John; Bendl, Jaroslav	April 4, 2024	Not Determined
38585978	Create Study	Immediate-Early Genes as Influencers in Genetic Networks and their Role in Alzheimer''s Disease.	bioRxiv : the preprint server for biology	Zachariou, Margarita; Loizidou, Eleni M; Spyrou, George M	March 29, 2024	Not Determined
38562822	Create Study	Single-cell genomics and regulatory networks for 388 human brains.	bioRxiv : the preprint server for biology	Emani, Prashant S; Liu, Jason J; Clarke, Declan; Jensen, Matthew; Warrell, Jonathan; Gupta, Chirag; Meng, Ran; Lee, Che Yu; Xu, Siwei; Dursun, Cagatay; Lou, Shaoke; Chen, Yuhang; Chu, Zhiyuan; Galeev, Timur; Hwang, Ahyeon; Li, Yunyang; Ni, Pengyu; Zhou, Xiao; PsychENCODE Consortium; Bakken, Trygve E; Bendl, Jaroslav; Bicks, Lucy; Chatterjee, Tanima; Cheng, Lijun; Cheng, Yuyan; Dai, Yi; Duan, Ziheng; Flaherty, Mary; Fullard, John F; Gancz, Michael; Garrido-Martín, Diego; Gaynor-Gillett, Sophia; Grundman, Jennifer; Hawken, Natalie; Henry, Ella; Hoffman, Gabriel E; Huang, Ao; Jiang, Yunzhe; Jin, Ting; Jorstad, Nikolas L; Kawaguchi, Riki; Khullar, Saniya; Liu, Jianyin; Liu, Junhao; Liu, Shuang; Ma, Shaojie; Margolis, Michael; Mazariegos, Samantha; Moore, Jill; Moran, Jennifer R; Nguyen, Eric; Phalke, Nishigandha; Pjanic, Milos; Pratt, Henry; Quintero, Diana; Rajagopalan, Ananya S; Riesenmy, Tiernon R; Shedd, Nicole; Shi, Manman; Spector, Megan; Terwilliger, Rosemarie; Travaglini, Kyle J; Wamsley, Brie; Wang, Gaoyuan; Xia, Yan; Xiao, Shaohua; Yang, Andrew C; Zheng, Suchen; Gandal, Michael J; Lee, Donghoon; Lein, Ed S; Roussos, Panos; Sestan, Nenad; Weng, Zhiping; White, Kevin P; Won, Hyejung; Girgenti, Matthew J; Zhang, Jing; Wang, Daifeng; Geschwind, Daniel; Gerstein, Mark	March 30, 2024	Not Determined
38559190	Create Study	An integrative systems-biology approach defines mechanisms of Alzheimer''s disease neurodegeneration.	bioRxiv : the preprint server for biology	Leventhal, Matthew J; Zanella, Camila A; Kang, Byunguk; Peng, Jiajie; Gritsch, David; Liao, Zhixiang; Bukhari, Hassan; Wang, Tao; Pao, Ping-Chieh; Danquah, Serwah; Benetatos, Joseph; Nehme, Ralda; Farhi, Samouil; Tsai, Li-Huei; Dong, Xianjun; Scherzer, Clemens R; Feany, Mel B; Fraenkel, Ernest	October 9, 2024	Not Determined
38402414	Create Study	Evaluating and improving health equity and fairness of polygenic scores.	HGG advances	Zhang, Tianyu; Zhou, Geyu; Klei, Lambertus; Liu, Peng; Chouldechova, Alexandra; Zhao, Hongyu; Roeder, Kathryn; G'Sell, Max; Devlin, Bernie	April 11, 2024	Not Determined
38395959	Create Study	Coexpression network analysis of the adult brain sheds light on the pathogenic mechanism of DDR1 in schizophrenia and bipolar disorder.	Translational psychiatry	Aranda, Selena; Muntané, Gerard; Vilella, Elisabet	February 23, 2024	Not Determined
38370821	Create Study	Functional 3''-UTR Variants Identify Regulatory Mechanisms Impacting Alcohol Use Disorder and Related Traits.	bioRxiv : the preprint server for biology	Chen, Andy B; Yu, Xuhong; Thapa, Kriti S; Gao, Hongyu; Reiter, Jill L; Xuei, Xiaoling; Tsai, Andy P; Landreth, Gary E; Lai, Dongbing; Wang, Yue; Foroud, Tatiana M; Tischfield, Jay A; Edenberg, Howard J; Liu, Yunlong	February 5, 2024	Not Determined
38321095	Create Study	Network-based drug repurposing for schizophrenia.	Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology	Truong, Trang T T; Liu, Zoe S J; Panizzutti, Bruna; Kim, Jee Hyun; Dean, Olivia M; Berk, Michael; Walder, Ken	May 1, 2024	Not Determined
38260577	Create Study	Polygenic risk for schizophrenia converges on alternative polyadenylation as molecular mechanism underlying synaptic impairment.	bioRxiv : the preprint server for biology	Raabe, Florian J; Hausruckinger, Anna; Gagliardi, Miriam; Ahmad, Ruhel; Almeida, Valeria; Galinski, Sabrina; Hoffmann, Anke; Weigert, Liesa; Rummel, Christine K; Murek, Vanessa; Trastulla, Lucia; Jimenez-Barron, Laura; Atella, Alessia; Maidl, Susanne; Menegaz, Danusa; Hauger, Barbara; Wagner, Eva-Maria; Gabellini, Nadia; Kauschat, Beate; Riccardo, Sara; Cesana, Marcella; Papiol, Sergi; Sportelli, Vincenza; Rex-Haffner, Monika; Stolte, Sebastian J; Wehr, Michael C; Salcedo, Tatiana Oviedo; Papazova, Irina; Detera-Wadleigh, Sevilla; McMahon, Francis J; Schmitt, Andrea; Falkai, Peter; Hasan, Alkomiet; Cacchiarelli, Davide; Dannlowski, Udo; Nenadić, Igor; Kircher, Tilo; Scheuss, Volker; Eder, Matthias; Binder, Elisabeth B; Spengler, Dietmar; Rossner, Moritz J; Ziller, Michael J	January 13, 2024	Not Determined
38254182	Create Study	PICALO: principal interaction component analysis for the identification of discrete technical, cell-type, and environmental factors that mediate eQTLs.	Genome biology	Vochteloo, Martijn; Deelen, Patrick; Vink, Britt; BIOS Consortium; Tsai, Ellen A; Runz, Heiko; Andreu-Sánchez, Sergio; Fu, Jingyuan; Zhernakova, Alexandra; Westra, Harm-Jan; Franke, Lude	January 22, 2024	Not Determined
38145985	Create Study	Convergence of the dysregulated regulome in schizophrenia with polygenic risk and evolutionarily constrained enhancers.	Molecular psychiatry	Dong, Pengfei; Voloudakis, Georgios; Fullard, John F; Hoffman, Gabriel E; Roussos, Panos	March 1, 2024	Not Determined
37904203	Create Study	DeepGAMI: deep biologically guided auxiliary learning for multimodal integration and imputation to improve genotype-phenotype prediction.	Genome medicine	Chandrashekar, Pramod Bharadwaj; Alatkar, Sayali; Wang, Jiebiao; Hoffman, Gabriel E; He, Chenfeng; Jin, Ting; Khullar, Saniya; Bendl, Jaroslav; Fullard, John F; Roussos, Panos; Wang, Daifeng	October 31, 2023	Not Determined
37886514	Create Study	The neuronal chromatin landscape in adult schizophrenia brains is linked to early fetal development.	Research square	Girdhar, Kiran; Bendl, Jaroslav; Baumgartner, Andrew; Therrien, Karen; Venkatesh, Sanan; Mathur, Deepika; Dong, Pengfei; Rahman, Samir; Kleopoulos, Steven P; Misir, Ruth; Reach, Sarah M; Auluck, Pavan K; Marenco, Stefano; Lewis, David A; Haroutunian, Vahram; Funk, Cory; Voloudakis, Georgios; Hoffman, Gabriel E; Fullard, John F; Roussos, Panos	October 2, 2023	Not Determined
37873320	Create Study	The neuronal chromatin landscape in adult schizophrenia brains is linked to early fetal development.	medRxiv : the preprint server for health sciences	Girdhar, Kiran; Bendl, Jaroslav; Baumgartner, Andrew; Therrien, Karen; Venkatesh, Sanan; Mathur, Deepika; Dong, Pengfei; Rahman, Samir; Kleopoulos, Steven P; Misir, Ruth; Reach, Sarah M; Auluck, Pavan K; Marenco, Stefano; Lewis, David A; Haroutunian, Vahram; Funk, Cory; Voloudakis, Georgios; Hoffman, Gabriel E; Fullard, John F; Roussos, Panos	October 3, 2023	Not Determined
37831723	Create Study	Investigating trait variability of gene co-expression network architecture in brain by controlling for genomic risk of schizophrenia.	PLoS genetics	Radulescu, Eugenia; Chen, Qiang; Pergola, Giulio; Di Carlo, Pasquale; Han, Shizhong; Shin, Joo Heon; Hyde, Thomas M; Kleinman, Joel E; Weinberger, Daniel R	October 1, 2023	Not Determined
37824614	Create Study	Multi-omic profiling of the developing human cerebral cortex at the single-cell level.	Science advances	Zhu, Kaiyi; Bendl, Jaroslav; Rahman, Samir; Vicari, James M; Coleman, Claire; Clarence, Tereza; Latouche, Ovaun; Tsankova, Nadejda M; Li, Aiqun; Brennand, Kristen J; Lee, Donghoon; Yuan, Guo-Cheng; Fullard, John F; Roussos, Panos	October 13, 2023	Not Determined
37811875	Create Study	Lineage specific 3D genome structure in the adult human brain and neurodevelopmental changes in the chromatin interactome.	Nucleic acids research	Rahman, Samir; Dong, Pengfei; Apontes, Pasha; Fernando, Michael B; Kosoy, Roman; Townsley, Kayla G; Girdhar, Kiran; Bendl, Jaroslav; Shao, Zhiping; Misir, Ruth; Tsankova, Nadia; Kleopoulos, Steven P; Brennand, Kristen J; Fullard, John F; Roussos, Panos	November 10, 2023	Not Determined
37719145	Create Study	Better together: Non-additive interactions between schizophrenia risk genes.	Cell genomics	Deans, P J Michael; Brennand, Kristen J	September 13, 2023	Not Determined
37715107	Create Study	Decreased CNNM2 expression in prefrontal cortex affects sensorimotor gating function, cognition, dendritic spine morphogenesis and risk of schizophrenia.	Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology	Zhou, Dan-Yang; Su, Xi; Wu, Yong; Yang, Yongfeng; Zhang, Luwen; Cheng, Shumin; Shao, Minglong; Li, Wenqiang; Zhang, Zhaohui; Wang, Lu; Lv, Luxian; Li, Ming; Song, Meng	January 1, 2024	Not Determined
37620341	Create Study	Human forebrain organoid-based multi-omics analyses of PCCB as a schizophrenia associated gene linked to GABAergic pathways.	Nature communications	Zhang, Wendiao; Zhang, Ming; Xu, Zhenhong; Yan, Hongye; Wang, Huimin; Jiang, Jiamei; Wan, Juan; Tang, Beisha; Liu, Chunyu; Chen, Chao; Meng, Qingtuan	August 24, 2023	Not Determined
37563770	Create Study	Transcriptional risk scores in Alzheimer''s disease: From pathology to cognition.	Alzheimer''s & dementia : the journal of the Alzheimer''s Association	Pyun, Jung-Min; Park, Young Ho; Wang, Jiebiao; Bennett, David A; Bice, Paula J; Kim, Jun Pyo; Kim, SangYun; Saykin, Andrew J; Nho, Kwangsik	January 1, 2024	Not Determined
37550530	Create Study	Genome-wide analysis of a model-derived binge eating disorder phenotype identifies risk loci and implicates iron metabolism.	Nature genetics	Burstein, David; Griffen, Trevor C; Therrien, Karen; Bendl, Jaroslav; Venkatesh, Sanan; Dong, Pengfei; Modabbernia, Amirhossein; Zeng, Biao; Mathur, Deepika; Hoffman, Gabriel; Sysko, Robyn; Hildebrandt, Tom; Voloudakis, Georgios; Roussos, Panos	September 1, 2023	Not Determined
37546856	Create Study	Dopaminoceptive D1 and D2 neurons in ventral hippocampus arbitrate approach and avoidance in anxiety.	bioRxiv : the preprint server for biology	Godino, Arthur; Salery, Marine; Minier-Toribio, Angelica M; Patel, Vishwendra; Fullard, John F; Parise, Eric M; Martinez-Rivera, Freddyson J; Morel, Carole; Roussos, Panos; Blitzer, Robert D; Nestler, Eric J	July 28, 2023	Not Determined
37515770	Create Study	The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina.	Cell reports	Pruvost, Mathilde; Patzig, Julia; Yattah, Camila; Selcen, Ipek; Hernandez, Marylens; Park, Hye-Jin; Moyon, Sarah; Liu, Shibo; Morioka, Malia S; Shopland, Lindsay; Al-Dalahmah, Osama; Bendl, Jaroslav; Fullard, John F; Roussos, Panos; Goldman, James; He, Ye; Dupree, Jeffrey L; Casaccia, Patrizia	August 29, 2023	Not Determined
37502907	Create Study	Schizophrenia Risk Mapping and Functional Engineering of the 3D Genome in Three Neuronal Subtypes.	bioRxiv : the preprint server for biology	Powell, Samuel K; Liao, Will; O'Shea, Callan; Kammourh, Sarah; Ghorbani, Sadaf; Rigat, Raymond; Elahi, Rahat; Deans, Pj Michael; Le, Derek J; Agarwal, Poonam; Seow, Wei Qiang; Wang, Kevin C; Akbarian, Schahram; Brennand, Kristen J	July 19, 2023	Not Determined
37464041	Create Study	Depression pathophysiology, risk prediction of recurrence and comorbid psychiatric disorders using genome-wide analyses.	Nature medicine	Als, Thomas D; Kurki, Mitja I; Grove, Jakob; Voloudakis, Georgios; Therrien, Karen; Tasanko, Elisa; Nielsen, Trine Tollerup; Naamanka, Joonas; Veerapen, Kumar; Levey, Daniel F; Bendl, Jaroslav; Bybjerg-Grauholm, Jonas; Zeng, Biao; Demontis, Ditte; Rosengren, Anders; Athanasiadis, Georgios; Bækved-Hansen, Marie; Qvist, Per; Bragi Walters, G; Thorgeirsson, Thorgeir; Stefánsson, Hreinn; Musliner, Katherine L; Rajagopal, Veera M; Farajzadeh, Leila; Thirstrup, Janne; Vilhjálmsson, Bjarni J; McGrath, John J; Mattheisen, Manuel; Meier, Sandra; Agerbo, Esben; Stefánsson, Kári; Nordentoft, Merete; Werge, Thomas; Hougaard, David M; Mortensen, Preben B; Stein, Murray B; Gelernter, Joel; Hovatta, Iiris; Roussos, Panos; Daly, Mark J; Mors, Ole; Palotie, Aarno; Børglum, Anders D	July 1, 2023	Not Determined
37454787	Create Study	Activity-Dependent Transcriptional Program in NGN2+ Neurons Enriched for Genetic Risk for Brain-Related Disorders.	Biological psychiatry	Ma, Yixuan; Bendl, Jaroslav; Hartley, Brigham J; Fullard, John F; Abdelaal, Rawan; Ho, Seok-Man; Kosoy, Roman; Gochman, Peter; Rapoport, Judith; Hoffman, Gabriel E; Brennand, Kristen J; Roussos, Panos	January 15, 2024	Not Determined
37452335	Create Study	Reduced Vrk2 expression is associated with higher risk of depression in humans and mediates depressive-like behaviors in mice.	BMC medicine	Yin, Mei-Yu; Guo, Lei; Zhao, Li-Juan; Zhang, Chen; Liu, Wei-Peng; Zhang, Chu-Yi; Huo, Jin-Hua; Wang, Lu; Li, Shi-Wu; Zheng, Chang-Bo; Xiao, Xiao; Li, Ming; Wang, Chuang; Chang, Hong	July 14, 2023	Not Determined
37425902	Create Study	Cell type and condition specific functional annotation of schizophrenia associated non-coding genetic variants.	bioRxiv : the preprint server for biology	Rummel, Christine K; Gagliardi, Miriam; Herholt, Alexander; Ahmad, Ruhel; Murek, Vanessa; Weigert, Liesa; Hausruckinger, Anna; Maidl, Susanne; Jimenez-Barron, Laura; Trastulla, Lucia; Eder, Mathias; Rossner, Moritz; Ziller, Michael J	June 27, 2023	Not Determined
37398070	Create Study	Genetic mechanisms for impaired synaptic plasticity in schizophrenia revealed by computational modelling.	bioRxiv : the preprint server for biology	Mäki-Marttunen, Tuomo; Blackwell, Kim T; Akkouh, Ibrahim; Shadrin, Alexey; Valstad, Mathias; Elvsåshagen, Tobjørn; Linne, Marja-Leena; Djurovic, Srdjan; Einevoll, Gaute T; Andreassen, Ole A	June 14, 2023	Not Determined
37270547	Create Study	Balanced SET levels favor the correct enhancer repertoire during cell fate acquisition.	Nature communications	Zaghi, Mattia; Banfi, Federica; Massimino, Luca; Volpin, Monica; Bellini, Edoardo; Brusco, Simone; Merelli, Ivan; Barone, Cristiana; Bruni, Michela; Bossini, Linda; Lamparelli, Luigi Antonio; Pintado, Laura; D'Aliberti, Deborah; Spinelli, Silvia; Mologni, Luca; Colasante, Gaia; Ungaro, Federica; Cioni, Jean-Michel; Azzoni, Emanuele; Piazza, Rocco; Montini, Eugenio; Broccoli, Vania; Sessa, Alessandro	June 3, 2023	Not Determined
37214898	Create Study	Distinct genetic liability profiles define clinically relevant patient strata across common diseases.	medRxiv : the preprint server for health sciences	Trastulla, Lucia; Moser, Sylvain; Jiménez-Barrón, Laura T; Andlauer, Till F M; von Scheidt, Moritz; Schizophrenia Working Group of the Psychiatric Genomics Consortium; Budde, Monika; Heilbronner, Urs; Papiol, Sergi; Teumer, Alexander; Homuth, Georg; Falkai, Peter; Völzke, Henry; Dörr, Marcus; Schulze, Thomas G; Gagneur, Julien; Iorio, Francesco; Müller-Myhsok, Bertram; Schunkert, Heribert; Ziller, Michael J	May 11, 2023	Not Determined
37205394	Create Study	ZBTB7A regulates MDD-specific chromatin signatures and astrocyte-mediated stress vulnerability in orbitofrontal cortex.	bioRxiv : the preprint server for biology	Fulton, Sasha L; Bendl, Jaroslav; Gameiro-Ros, Isabel; Fullard, John F; Al-Kachak, Amni; Lepack, Ashley E; Stewart, Andrew F; Singh, Sumnima; Poller, Wolfram C; Bastle, Ryan M; Hauberg, Mads E; Fakira, Amanda K; Chen, Min; Cuttoli, Romain Durand-de; Cathomas, Flurin; Ramakrishnan, Aarthi; Gleason, Kelly; Shen, Li; Tamminga, Carol A; Milosevic, Ana; Russo, Scott J; Swirski, Filip; Blitzer, Robert D; Slesinger, Paul A; Roussos, Panos; Maze, Ian	May 4, 2023	Not Determined
37197740	Create Study	Gradient-based sparse principal component analysis with extensions to online learning.	Biometrika	Qiu, Yixuan; Lei, Jing; Roeder, Kathryn	June 1, 2023	Not Determined
37090548	Create Study	Genetic regulation of cell-type specific chromatin accessibility shapes the etiology of brain diseases.	bioRxiv : the preprint server for biology	Zeng, Biao; Bendl, Jaroslav; Deng, Chengyu; Lee, Donghoon; Misir, Ruth; Reach, Sarah M; Kleopoulos, Steven P; Auluck, Pavan; Marenco, Stefano; Lewis, David A; Haroutunian, Vahram; Ahituv, Nadav; Fullard, John F; Hoffman, Gabriel E; Roussos, Panos	March 2, 2023	Not Determined
37058565	Create Study	Consensus molecular environment of schizophrenia risk genes in coexpression networks shifting across age and brain regions.	Science advances	Pergola, Giulio; Parihar, Madhur; Sportelli, Leonardo; Bharadwaj, Rahul; Borcuk, Christopher; Radulescu, Eugenia; Bellantuono, Loredana; Blasi, Giuseppe; Chen, Qiang; Kleinman, Joel E; Wang, Yanhong; Sripathy, Srinidhi Rao; Maher, Brady J; Monaco, Alfonso; Rossi, Fabiana; Shin, Joo Heon; Hyde, Thomas M; Bertolino, Alessandro; Weinberger, Daniel R	April 14, 2023	Not Determined
37034773	Create Study	Human forebrain organoids-based multi-omics analyses reveal PCCB''s regulation on GABAergic system contributing to schizophrenia.	Research square	Zhang, Wendiao; Zhang, Ming; Xu, Zhenhong; Yan, Hongye; Wang, Huimin; Jiang, Jiamei; Wan, Juan; Tang, Beisha; Liu, Chunyu; Chen, Chao; Meng, Qingtuan	March 29, 2023	Not Determined
36993743	Create Study	Evaluating performance and applications of sample-wise cell deconvolution methods on human brain transcriptomic data.	bioRxiv : the preprint server for biology	Dai, Rujia; Chu, Tianyao; Zhang, Ming; Wang, Xuan; Jourdon, Alexandre; Wu, Feinan; Mariani, Jessica; Vaccarino, Flora M; Lee, Donghoon; Fullard, John F; Hoffman, Gabriel E; Roussos, Panos; Wang, Yue; Wang, Xusheng; Pinto, Dalila; Wang, Sidney H; Zhang, Chunling; PsychENCODE consortium; Chen, Chao; Liu, Chunyu	March 15, 2023	Not Determined
36993704	Create Study	Efficient differential expression analysis of large-scale single cell transcriptomics data using dreamlet.	bioRxiv : the preprint server for biology	Hoffman, Gabriel E; Lee, Donghoon; Bendl, Jaroslav; Prashant, N M; Hong, Aram; Casey, Clara; Alvia, Marcela; Shao, Zhiping; Argyriou, Stathis; Therrien, Karen; Venkatesh, Sanan; Voloudakis, Georgios; Haroutunian, Vahram; Fullard, John F; Roussos, Panos	November 20, 2024	Not Determined
36993466	Create Study	Non-additive effects of schizophrenia risk genes reflect convergent downstream function.	medRxiv : the preprint server for health sciences	Deans, Pj Michael; Seah, Carina; Johnson, Jessica; Gonzalez, Judit Garcia; Townsley, Kayla; Cao, Evan; Schrode, Nadine; Stahl, Eli; O'Reilly, Paul; Huckins, Laura M; Brennand, Kristen J	March 21, 2023	Not Determined
36945630	Create Study	Cross-ancestry, cell-type-informed atlas of gene, isoform, and splicing regulation in the developing human brain.	medRxiv : the preprint server for health sciences	Wen, Cindy; Margolis, Michael; Dai, Rujia; Zhang, Pan; Przytycki, Pawel F; Vo, Daniel D; Bhattacharya, Arjun; Matoba, Nana; Jiao, Chuan; Kim, Minsoo; Tsai, Ellen; Hoh, Celine; Aygün, Nil; Walker, Rebecca L; Chatzinakos, Christos; Clarke, Declan; Pratt, Henry; Consortium, PsychENCODE; Peters, Mette A; Gerstein, Mark; Daskalakis, Nikolaos P; Weng, Zhiping; Jaffe, Andrew E; Kleinman, Joel E; Hyde, Thomas M; Weinberger, Daniel R; Bray, Nicholas J; Sestan, Nenad; Geschwind, Daniel H; Roeder, Kathryn; Gusev, Alexander; Pasaniuc, Bogdan; Stein, Jason L; Love, Michael I; Pollard, Katherine S; Liu, Chunyu; Gandal, Michael J	March 6, 2023	Not Determined
36932057	Create Study	Antipsychotic drug use complicates assessment of gene expression changes associated with schizophrenia.	Translational psychiatry	Schulmann, Anton; Marenco, Stefano; Vawter, Marquis P; Akula, Nirmala; Limon, Agenor; Mandal, Ajeet; Auluck, Pavan K; Patel, Yash; Lipska, Barbara K; McMahon, Francis J	March 17, 2023	Not Determined
36897291	Create Study	Aberrant GAP43 Gene Expression Is Alzheimer Disease Pathology-Specific.	Annals of neurology	Pyun, Jung-Min; Park, Young Ho; Wang, Jiebiao; Bice, Paula J; Bennett, David A; Kim, SangYun; Saykin, Andrew J; Nho, Kwangsik	May 1, 2023	Not Determined
36824845	Create Study	Massively parallel characterization of psychiatric disorder-associated and cell-type-specific regulatory elements in the developing human cortex.	bioRxiv : the preprint server for biology	Deng, Chengyu; Whalen, Sean; Steyert, Marilyn; Ziffra, Ryan; Przytycki, Pawel F; Inoue, Fumitaka; Pereira, Daniela A; Capauto, Davide; Norton, Scott; Vaccarino, Flora M; Pollen, Alex; Nowakowski, Tomasz J; Ahituv, Nadav; Pollard, Katherine S	February 16, 2023	Not Determined
36790927	Create Study	Genomic profiling of HIV-1 integration in microglia cells links viral integration to the topologically associated domains.	Cell reports	Rheinberger, Mona; Costa, Ana Luisa; Kampmann, Martin; Glavas, Dunja; Shytaj, Iart Luca; Sreeram, Sheetal; Penzo, Carlotta; Tibroni, Nadine; Garcia-Mesa, Yoelvis; Leskov, Konstantin; Fackler, Oliver T; Vlahovicek, Kristian; Karn, Jonathan; Lucic, Bojana; Herrmann, Carl; Lusic, Marina	February 28, 2023	Not Determined
36711948	Create Study	Detecting and Adjusting for Hidden Biases due to Phenotype Misclassification in Genome-Wide Association Studies.	medRxiv : the preprint server for health sciences	Burstein, David; Hoffman, Gabriel; Mathur, Deepika; Venkatesh, Sanan; Therrien, Karen; Fanous, Ayman H; Bigdeli, Tim B; Harvey, Philip D; Roussos, Panos; Voloudakis, Georgios	January 18, 2023	Not Determined
36702997	Create Study	Genome-wide analyses of ADHD identify 27 risk loci, refine the genetic architecture and implicate several cognitive domains.	Nature genetics	Demontis, Ditte; Walters, G Bragi; Athanasiadis, Georgios; Walters, Raymond; Therrien, Karen; Nielsen, Trine Tollerup; Farajzadeh, Leila; Voloudakis, Georgios; Bendl, Jaroslav; Zeng, Biau; Zhang, Wen; Grove, Jakob; Als, Thomas D; Duan, Jinjie; Satterstrom, F Kyle; Bybjerg-Grauholm, Jonas; Bækved-Hansen, Marie; Gudmundsson, Olafur O; Magnusson, Sigurdur H; Baldursson, Gisli; Davidsdottir, Katrin; Haraldsdottir, Gyda S; Agerbo, Esben; Hoffman, Gabriel E; Dalsgaard, Søren; Martin, Joanna; Ribasés, Marta; Boomsma, Dorret I; Soler Artigas, Maria; Roth Mota, Nina; Howrigan, Daniel; Medland, Sarah E; Zayats, Tetyana; Rajagopal, Veera M; ADHD Working Group of the Psychiatric Genomics Consortium; iPSYCH-Broad Consortium; Nordentoft, Merete; Mors, Ole; Hougaard, David M; Mortensen, Preben Bo; Daly, Mark J; Faraone, Stephen V; Stefansson, Hreinn; Roussos, Panos; Franke, Barbara; Werge, Thomas; Neale, Benjamin M; Stefansson, Kari; Børglum, Anders D	February 1, 2023	Not Determined
36652379	Create Study	The relationship between case-control differential gene expression from brain tissue and genetic associations in schizophrenia.	American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics	Clifton, Nicholas E; Schulmann, Anton; Schizophrenia Working Group of the Psychiatric Genomics Consortium; Holmans, Peter A; O'Donovan, Michael C; Vawter, Marquis P	January 1, 2023	Not Determined
36624241	Create Study	Genome-wide association study of school grades identifies genetic overlap between language ability, psychopathology and creativity.	Scientific reports	Rajagopal, Veera M; Ganna, Andrea; Coleman, Jonathan R I; Allegrini, Andrea; Voloudakis, Georgios; Grove, Jakob; Als, Thomas D; Horsdal, Henriette T; Petersen, Liselotte; Appadurai, Vivek; Schork, Andrew; Buil, Alfonso; Bulik, Cynthia M; Bybjerg-Grauholm, Jonas; Bækvad-Hansen, Marie; Hougaard, David M; Mors, Ole; Nordentoft, Merete; Werge, Thomas; iPSYCH-Broad Consortium; Mortensen, Preben Bo; Breen, Gerome; Roussos, Panos; Plomin, Robert; Agerbo, Esben; Børglum, Anders D; Demontis, Ditte	January 9, 2023	Not Determined
36504281	Create Study	The genetic regulation of protein expression in cerebrospinal fluid.	EMBO molecular medicine	Hansson, Oskar; Kumar, Atul; Janelidze, Shorena; Stomrud, Erik; Insel, Philip S; Blennow, Kaj; Zetterberg, Henrik; Fauman, Eric; Hedman, Åsa K; Nagle, Michael W; Whelan, Christopher D; Baird, Denis; Mälarstig, Anders; Mattsson-Carlgren, Niklas	January 11, 2023	Not Determined
36443250	Create Study	Gene expression meta-analysis in patients with schizophrenia reveals up-regulation of RGS2 and RGS16 in Brodmann Area 10.	The European journal of neuroscience	Shriebman, Yaen; Yitzhaky, Assif; Kosloff, Mickey; Hertzberg, Libi	January 1, 2023	Not Determined
36424395	Create Study	Neuroimmune transcriptome changes in patient brains of psychiatric and neurological disorders.	Molecular psychiatry	Chen, Yu; Dai, Jiacheng; Tang, Longfei; Mikhailova, Tatiana; Liang, Qiuman; Li, Miao; Zhou, Jiaqi; Kopp, Richard F; Weickert, Cynthia; Chen, Chao; Liu, Chunyu	February 1, 2023	Not Determined
36372009	Create Study	Common and rare variants within SP4 exert distinct molecular mechanisms contributing to the risk of schizophrenia.	Psychiatry research	Zhang, Qing; Huo, Jin-Hua; Guo, Lei; Wang, Lu; Wang, Chuang; Li, Ming	December 1, 2022	Not Determined
36370000	Create Study	GALC variants affect galactosylceramidase enzymatic activity and risk of Parkinson''s disease.	Brain : a journal of neurology	Senkevich, Konstantin; Zorca, Cornelia E; Dworkind, Aliza; Rudakou, Uladzislau; Somerville, Emma; Yu, Eric; Ermolaev, Alexey; Nikanorova, Daria; Ahmad, Jamil; Ruskey, Jennifer A; Asayesh, Farnaz; Spiegelman, Dan; Fahn, Stanley; Waters, Cheryl; Monchi, Oury; Dauvilliers, Yves; Dupré, Nicolas; Greenbaum, Lior; Hassin-Baer, Sharon; Grenn, Francis P; Chiang, Ming Sum Ruby; Sardi, S Pablo; Vanderperre, Benoît; Blauwendraat, Cornelis; Trempe, Jean-François; Fon, Edward A; Durcan, Thomas M; Alcalay, Roy N; Gan-Or, Ziv	May 2, 2023	Not Determined
36171428	Create Study	The three-dimensional landscape of cortical chromatin accessibility in Alzheimer''s disease.	Nature neuroscience	Bendl, Jaroslav; Hauberg, Mads E; Girdhar, Kiran; Im, Eunju; Vicari, James M; Rahman, Samir; Fernando, Michael B; Townsley, Kayla G; Dong, Pengfei; Misir, Ruth; Kleopoulos, Steven P; Reach, Sarah M; Apontes, Pasha; Zeng, Biao; Zhang, Wen; Voloudakis, Georgios; Brennand, Kristen J; Nixon, Ralph A; Haroutunian, Vahram; Hoffman, Gabriel E; Fullard, John F; Roussos, Panos	October 1, 2022	Not Determined
36163279	Create Study	Population-level variation in enhancer expression identifies disease mechanisms in the human brain.	Nature genetics	Dong, Pengfei; Hoffman, Gabriel E; Apontes, Pasha; Bendl, Jaroslav; Rahman, Samir; Fernando, Michael B; Zeng, Biao; Vicari, James M; Zhang, Wen; Girdhar, Kiran; Townsley, Kayla G; Misir, Ruth; CommonMind Consortium; Brennand, Kristen J; Haroutunian, Vahram; Voloudakis, Georgios; Fullard, John F; Roussos, Panos	October 1, 2022	Not Determined
36163277	Create Study	Identification of shared and differentiating genetic architecture for autism spectrum disorder, attention-deficit hyperactivity disorder and case subgroups.	Nature genetics	Mattheisen, Manuel; Grove, Jakob; Als, Thomas D; Martin, Joanna; Voloudakis, Georgios; Meier, Sandra; Demontis, Ditte; Bendl, Jaroslav; Walters, Raymond; Carey, Caitlin E; Rosengren, Anders; Strom, Nora I; Hauberg, Mads Engel; Zeng, Biao; Hoffman, Gabriel; Zhang, Wen; Bybjerg-Grauholm, Jonas; Bækvad-Hansen, Marie; Agerbo, Esben; Cormand, Bru; Nordentoft, Merete; Werge, Thomas; Mors, Ole; Hougaard, David M; Buxbaum, Joseph D; Faraone, Stephen V; Franke, Barbara; Dalsgaard, Søren; Mortensen, Preben B; Robinson, Elise B; Roussos, Panos; Neale, Benjamin M; Daly, Mark J; Børglum, Anders D	October 1, 2022	Not Determined
36123423	Create Study	Comment on: What genes are differentially expressed in individuals with schizophrenia? A systematic review.	Molecular psychiatry	Hoffman, Gabriel E; Jaffe, Andrew E; Gandal, Michael J; Collado-Torres, Leonardo; Sieberts, Solveig K; Devlin, Bernie; Geschwind, Daniel H; Weinberger, Daniel R; Roussos, Panos	February 1, 2023	Not Determined
36094096	Create Study	Integrating multi-omics summary data using a Mendelian randomization framework.	Briefings in bioinformatics	Jin, Chong; Lee, Brian; Shen, Li; Long, Qi; Alzheimer’s Disease Neuroimaging Initiative; Alzheimer’s Disease Metabolomics Consortium	November 19, 2022	Not Determined
36064543	Create Study	A translational genomics approach identifies IL10RB as the top candidate gene target for COVID-19 susceptibility.	NPJ genomic medicine	Voloudakis, Georgios; Vicari, James M; Venkatesh, Sanan; Hoffman, Gabriel E; Dobrindt, Kristina; Zhang, Wen; Beckmann, Noam D; Higgins, Christina A; Argyriou, Stathis; Jiang, Shan; Hoagland, Daisy; Gao, Lina; Corvelo, André; Cho, Kelly; Lee, Kyung Min; Bian, Jiantao; Lee, Jennifer S; Iyengar, Sudha K; Luoh, Shiuh-Wen; Akbarian, Schahram; Striker, Robert; Assimes, Themistocles L; Schadt, Eric E; Lynch, Julie A; Merad, Miriam; tenOever, Benjamin R; Charney, Alexander W; Mount Sinai COVID-19 Biobank; VA Million Veteran Program COVID-19 Science Initiative; Brennand, Kristen J; Fullard, John F; Roussos, Panos	September 5, 2022	Not Determined
35987687	Create Study	Schizophrenia-associated differential DNA methylation in brain is distributed across the genome and annotated to MAD1L1, a locus at which DNA methylation and transcription phenotypes share genetic variation with schizophrenia risk.	Translational psychiatry	McKinney, Brandon C; McClain, Lora L; Hensler, Christopher M; Wei, Yue; Klei, Lambertus; Lewis, David A; Devlin, Bernie; Wang, Jiebiao; Ding, Ying; Sweet, Robert A	August 20, 2022	Not Determined
35982160	Create Study	Rare coding variation provides insight into the genetic architecture and phenotypic context of autism.	Nature genetics	Fu, Jack M; Satterstrom, F Kyle; Peng, Minshi; Brand, Harrison; Collins, Ryan L; Dong, Shan; Wamsley, Brie; Klei, Lambertus; Wang, Lily; Hao, Stephanie P; Stevens, Christine R; Cusick, Caroline; Babadi, Mehrtash; Banks, Eric; Collins, Brett; Dodge, Sheila; Gabriel, Stacey B; Gauthier, Laura; Lee, Samuel K; Liang, Lindsay; Ljungdahl, Alicia; Mahjani, Behrang; Sloofman, Laura; Smirnov, Andrey N; Barbosa, Mafalda; Betancur, Catalina; Brusco, Alfredo; Chung, Brian H Y; Cook, Edwin H; Cuccaro, Michael L; Domenici, Enrico; Ferrero, Giovanni Battista; Gargus, J Jay; Herman, Gail E; Hertz-Picciotto, Irva; Maciel, Patricia; Manoach, Dara S; Passos-Bueno, Maria Rita; Persico, Antonio M; Renieri, Alessandra; Sutcliffe, James S; Tassone, Flora; Trabetti, Elisabetta; Campos, Gabriele; Cardaropoli, Simona; Carli, Diana; Chan, Marcus C Y; Fallerini, Chiara; Giorgio, Elisa; Girardi, Ana Cristina; Hansen-Kiss, Emily; Lee, So Lun; Lintas, Carla; Ludena, Yunin; Nguyen, Rachel; Pavinato, Lisa; Pericak-Vance, Margaret; Pessah, Isaac N; Schmidt, Rebecca J; Smith, Moyra; Costa, Claudia I S; Trajkova, Slavica; Wang, Jaqueline Y T; Yu, Mullin H C; Autism Sequencing Consortium (ASC); Broad Institute Center for Common Disease Genomics (Broad-CCDG); iPSYCH-BROAD Consortium; Cutler, David J; De Rubeis, Silvia; Buxbaum, Joseph D; Daly, Mark J; Devlin, Bernie; Roeder, Kathryn; Sanders, Stephan J; Talkowski, Michael E	September 1, 2022	Not Determined
35750513	Create Study	The Neuroepigenome: Implications of Chemical and Physical Modifications of Genomic DNA in Schizophrenia.	Biological psychiatry	Girdhar, Kiran; Rahman, Samir; Dong, Pengfei; Fullard, John F; Roussos, Panos	September 15, 2022	Not Determined
35552371	Create Study	Sex differences in the genetic architecture of cognitive resilience to Alzheimer''s disease.	Brain : a journal of neurology	Eissman, Jaclyn M; Dumitrescu, Logan; Mahoney, Emily R; Smith, Alexandra N; Mukherjee, Shubhabrata; Lee, Michael L; Scollard, Phoebe; Choi, Seo Eun; Bush, William S; Engelman, Corinne D; Lu, Qiongshi; Fardo, David W; Trittschuh, Emily H; Mez, Jesse; Kaczorowski, Catherine C; Hernandez Saucedo, Hector; Widaman, Keith F; Buckley, Rachel F; Properzi, Michael J; Mormino, Elizabeth C; Yang, Hyun Sik; Harrison, Theresa M; Hedden, Trey; Nho, Kwangsik; Andrews, Shea J; Tommet, Douglas; Hadad, Niran; Sanders, R Elizabeth; Ruderfer, Douglas M; Gifford, Katherine A; Zhong, Xiaoyuan; Raghavan, Neha S; Vardarajan, Badri N; Alzheimer’s Disease Neuroimaging Initiative (ADNI); Alzheimer’s Disease Genetics Consortium (ADGC); A4 Study Team; Pericak-Vance, Margaret A; Farrer, Lindsay A; Wang, Li San; Cruchaga, Carlos; Schellenberg, Gerard D; Cox, Nancy J; Haines, Jonathan L; Keene, C Dirk; Saykin, Andrew J; Larson, Eric B; Sperling, Reisa A; Mayeux, Richard; Cuccaro, Michael L; Bennett, David A; Schneider, Julie A; Crane, Paul K; Jefferson, Angela L; Hohman, Timothy J	July 29, 2022	Not Determined
35527273	Create Study	Comprehensive and integrative analyses identify TYW5 as a schizophrenia risk gene.	BMC medicine	Zhang, Chengcheng; Li, Xiaojing; Zhao, Liansheng; Liang, Rong; Deng, Wei; Guo, Wanjun; Wang, Qiang; Hu, Xun; Du, Xiangdong; Sham, Pak Chung; Luo, Xiongjian; Li, Tao	May 9, 2022	Not Determined
35332326	Create Study	Chromatin domain alterations linked to 3D genome organization in a large cohort of schizophrenia and bipolar disorder brains.	Nature neuroscience	Girdhar, Kiran; Hoffman, Gabriel E; Bendl, Jaroslav; Rahman, Samir; Dong, Pengfei; Liao, Will; Hauberg, Mads E; Sloofman, Laura; Brown, Leanne; Devillers, Olivia; Kassim, Bibi S; Wiseman, Jennifer R; Park, Royce; Zharovsky, Elizabeth; Jacobov, Rivky; Flatow, Elie; Kozlenkov, Alexey; Gilgenast, Thomas; Johnson, Jessica S; Couto, Lizette; Peters, Mette A; Phillips-Cremins, Jennifer E; Hahn, Chang-Gyu; Gur, Raquel E; Tamminga, Carol A; Lewis, David A; Haroutunian, Vahram; PsychENCODE Consortium; Dracheva, Stella; Lipska, Barbara K; Marenco, Stefano; Kundakovic, Marija; Fullard, John F; Jiang, Yan; Roussos, Panos; Akbarian, Schahram	April 1, 2022	Not Determined
35115012	Create Study	Comparison of confound adjustment methods in the construction of gene co-expression networks.	Genome biology	Cote, Alanna C; Young, Hannah E; Huckins, Laura M	February 3, 2022	Not Determined
35094059	Create Study	Functional variant rs2270363 on 16p13.3 confers schizophrenia risk by regulating NMRAL1.	Brain : a journal of neurology	Wang, Junyang; Li, Shiwu; Li, Xiaoyan; Liu, Jiewei; Yang, Jinfeng; Li, Yifan; Li, Wenqiang; Yang, Yongfeng; Li, Jiao; Chen, Rui; Li, Kaiqin; Huang, Di; Liu, Yixing; Lv, Luxian; Li, Ming; Xiao, Xiao; Luo, Xiong Jian	July 29, 2022	Not Determined
35058635	Create Study	Multi-ancestry eQTL meta-analysis of human brain identifies candidate causal variants for brain-related traits.	Nature genetics	Zeng, Biao; Bendl, Jaroslav; Kosoy, Roman; Fullard, John F; Hoffman, Gabriel E; Roussos, Panos	February 1, 2022	Not Determined
35045295	Create Study	A bidirectional competitive interaction between circHomer1 and Homer1b within the orbitofrontal cortex regulates reversal learning.	Cell reports	Hafez, Alexander K; Zimmerman, Amber J; Papageorgiou, Grigorios; Chandrasekaran, Jayapriya; Amoah, Stephen K; Lin, Rixing; Lozano, Evelyn; Pierotti, Caroline; Dell'Orco, Michela; Hartley, Brigham J; Alural, Begüm; Lalonde, Jasmin; Esposito, John Matthew; Berretta, Sabina; Squassina, Alessio; Chillotti, Caterina; Voloudakis, Georgios; Shao, Zhiping; Fullard, John F; Brennand, Kristen J; Turecki, Gustavo; Roussos, Panos; Perlis, Roy H; Haggarty, Stephen J; Perrone-Bizzozero, Nora; Brigman, Jonathan L; Mellios, Nikolaos	January 18, 2022	Not Determined
34978167	Create Study	Regulatory Variant rs2535629 in ITIH3 Intron Confers Schizophrenia Risk By Regulating CTCF Binding and SFMBT1 Expression.	Advanced science (Weinheim, Baden-Wurttemberg, Germany)	Li, Yifan; Ma, Changguo; Li, Shiwu; Wang, Junyang; Li, Wenqiang; Yang, Yongfeng; Li, Xiaoyan; Liu, Jiewei; Yang, Jinfeng; Liu, Yixing; Li, Kaiqin; Li, Jiao; Huang, Di; Chen, Rui; Lv, Luxian; Xiao, Xiao; Li, Ming; Luo, Xiong-Jian	February 1, 2022	Not Determined
34903665	Create Study	Constructing local cell-specific networks from single-cell data.	Proceedings of the National Academy of Sciences of the United States of America	Wang, Xuran; Choi, David; Roeder, Kathryn	December 21, 2021	Not Determined
34789012	Create Study	The Genetic Architecture of Obsessive-Compulsive Disorder: Contribution of Liability to OCD From Alleles Across the Frequency Spectrum.	The American journal of psychiatry	Mahjani, Behrang; Klei, Lambertus; Mattheisen, Manuel; Halvorsen, Matthew W; Reichenberg, Abraham; Roeder, Kathryn; Pedersen, Nancy L; Boberg, Julia; de Schipper, Elles; Bulik, Cynthia M; Landén, Mikael; Fundín, Bengt; Mataix-Cols, David; Sandin, Sven; Hultman, Christina M; Crowley, James J; Buxbaum, Joseph D; Rück, Christian; Devlin, Bernie; Grice, Dorothy E	March 1, 2022	Not Determined
34680927	Create Study	Evaluation of Genotype-Based Gene Expression Model Performance: A Cross-Framework and Cross-Dataset Study.	Genes	Tavares, Vânia; Monteiro, Joana; Vassos, Evangelos; Coleman, Jonathan; Prata, Diana	September 28, 2021	Not Determined
34668925	Create Study	Use of the PsycheMERGE Network to Investigate the Association Between Depression Polygenic Scores and White Blood Cell Count.	JAMA psychiatry	Sealock, Julia M; Lee, Younga H; Moscati, Arden; Venkatesh, Sanan; Voloudakis, Georgios; Straub, Peter; Singh, Kritika; Feng, Yen-Chen A; Ge, Tian; Roussos, Panos; Smoller, Jordan W; Chen, Guanhua; Davis, Lea K	December 1, 2021	Not Determined
34663447	Create Study	Comprehensive multi-omics integration identifies differentially active enhancers during human brain development with clinical relevance.	Genome medicine	Yousefi, Soheil; Deng, Ruizhi; Lanko, Kristina; Salsench, Eva Medico; Nikoncuk, Anita; van der Linde, Herma C; Perenthaler, Elena; van Ham, Tjakko J; Mulugeta, Eskeatnaf; Barakat, Tahsin Stefan	October 19, 2021	Not Determined
34632689	Create Study	Sites of active gene regulation in the prenatal frontal cortex and their role in neuropsychiatric disorders.	American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics	Kouakou, Manuela R; Cameron, Darren; Hannon, Eilis; Dempster, Emma L; Mill, Jonathan; Hill, Matthew J; Bray, Nicholas J	September 1, 2021	Not Determined
34615535	Create Study	Prevalence and phenotypic impact of rare potentially damaging variants in autism spectrum disorder.	Molecular autism	Mahjani, Behrang; De Rubeis, Silvia; Gustavsson Mahjani, Christina; Mulhern, Maureen; Xu, Xinyi; Klei, Lambertus; Satterstrom, F Kyle; Fu, Jack; Talkowski, Michael E; Reichenberg, Abraham; Sandin, Sven; Hultman, Christina M; Grice, Dorothy E; Roeder, Kathryn; Devlin, Bernie; Buxbaum, Joseph D	October 6, 2021	Not Determined
34615521	Create Study	How rare and common risk variation jointly affect liability for autism spectrum disorder.	Molecular autism	Klei, Lambertus; McClain, Lora Lee; Mahjani, Behrang; Panayidou, Klea; De Rubeis, Silvia; Grahnat, Anna-Carin Säll; Karlsson, Gun; Lu, Yangyi; Melhem, Nadine; Xu, Xinyi; Reichenberg, Abraham; Sandin, Sven; Hultman, Christina M; Buxbaum, Joseph D; Roeder, Kathryn; Devlin, Bernie	October 6, 2021	Not Determined
34581804	Create Study	Regulatory variants at 2q33.1 confer schizophrenia risk by modulating distal gene TYW5 expression.	Brain : a journal of neurology	Li, Shiwu; Li, Jiao; Liu, Jiewei; Wang, Junyang; Li, Xiaoyan; Huo, Yongxia; Li, Yifan; Liu, Yixing; Li, Ming; Xiao, Xiao; Luo, Xiong-Jian	April 18, 2022	Not Determined
34508597	Create Study	A data harmonization pipeline to leverage external controls and boost power in GWAS.	Human molecular genetics	Chen, Danfeng; Tashman, Katherine; Palmer, Duncan S; Neale, Benjamin; Roeder, Kathryn; Bloemendal, Alex; Churchhouse, Claire; Ke, Zheng Tracy	February 3, 2022	Not Determined
34497263	Create Study	Characterising the shared genetic determinants of bipolar disorder, schizophrenia and risk-taking.	Translational psychiatry	Hindley, Guy; Bahrami, Shahram; Steen, Nils Eiel; O'Connell, Kevin S; Frei, Oleksandr; Shadrin, Alexey; Bettella, Francesco; Rødevand, Linn; Fan, Chun C; Dale, Anders M; Djurovic, Srdjan; Smeland, Olav B; Andreassen, Ole A	September 8, 2021	Not Determined
34469739	Create Study	Full-length isoform transcriptome of the developing human brain provides further insights into autism.	Cell reports	Chau, Kevin K; Zhang, Pan; Urresti, Jorge; Amar, Megha; Pramod, Akula Bala; Chen, Jiaye; Thomas, Amy; Corominas, Roser; Lin, Guan Ning; Iakoucheva, Lilia M	August 31, 2021	Not Determined
34459489	Create Study	An approach to gene-based testing accounting for dependence of tests among nearby genes.	Briefings in bioinformatics	Yurko, Ronald; Roeder, Kathryn; Devlin, Bernie; G'Sell, Max	November 5, 2021	Not Determined
34446734	Create Study	Epigenetic inactivation of the autophagy-lysosomal system in appendix in Parkinson''s disease.	Nature communications	Gordevicius, Juozas; Li, Peipei; Marshall, Lee L; Killinger, Bryan A; Lang, Sean; Ensink, Elizabeth; Kuhn, Nathan C; Cui, Wei; Maroof, Nazia; Lauria, Roberta; Rueb, Christina; Siebourg-Polster, Juliane; Maliver, Pierre; Lamp, Jared; Vega, Irving; Manfredsson, Fredric P; Britschgi, Markus; Labrie, Viviane	August 26, 2021	Not Determined
34433407	Create Study	A pipeline for RNA-seq based eQTL analysis with automated quality control procedures.	BMC bioinformatics	Wang, Tao; Liu, Yongzhuang; Ruan, Junpeng; Dong, Xianjun; Wang, Yadong; Peng, Jiajie	August 25, 2021	Not Determined
34380480	Create Study	Genome-wide association study followed by trans-ancestry meta-analysis identify 17 new risk loci for schizophrenia.	BMC medicine	Liu, Jiewei; Li, Shiwu; Li, Xiaoyan; Li, Wenqiang; Yang, Yongfeng; Guo, Suqin; Lv, Luxian; Xiao, Xiao; Yao, Yong-Gang; Guan, Fanglin; Li, Ming; Luo, Xiong-Jian	August 12, 2021	Not Determined
34354320	Create Study	Exponential-Family Embedding With Application to Cell Developmental Trajectories for Single-Cell RNA-Seq Data.	Journal of the American Statistical Association	Lin, Kevin Z; Lei, Jing; Roeder, Kathryn	January 1, 2021	Not Determined
34323598	Create Study	DNA methylation differences in cortical grey and white matter in schizophrenia.	Epigenomics	Berdenis van Berlekom, Amber; Notman, Nina; Sneeboer, Marjolein Am; Snijders, Gijsje Jlj; Houtepen, Lotte C; Nispeling, Danny M; He, Yujie; Dracheva, Stella; Hol, Elly M; Kahn, René S; de Witte, Lot D; Boks, Marco P; Psychiatric Donor Program of the Netherlands Brain Bank (NBB-PSY)	August 1, 2021	Not Determined
34172755	Create Study	Neuronal and glial 3D chromatin architecture informs the cellular etiology of brain disorders.	Nature communications	Hu, Benxia; Won, Hyejung; Mah, Won; Park, Royce B; Kassim, Bibi; Spiess, Keeley; Kozlenkov, Alexey; Crowley, Cheynna A; Pochareddy, Sirisha; PsychENCODE Consortium; Li, Yun; Dracheva, Stella; Sestan, Nenad; Akbarian, Schahram; Geschwind, Daniel H	June 25, 2021	Not Determined
34154796	Create Study	Sex Differences in the Human Brain Transcriptome of Cases With Schizophrenia.	Biological psychiatry	Hoffman, Gabriel E; Ma, Yixuan; Montgomery, Kelsey S; Bendl, Jaroslav; Jaiswal, Manoj Kumar; Kozlenkov, Alex; Peters, Mette A; Dracheva, Stella; Fullard, John F; Chess, Andrew; Devlin, Bernie; Sieberts, Solveig K; Roussos, Panos	January 1, 2022	Not Determined
34151300	Create Study	Using the dCas9-KRAB system to repress gene expression in hiPSC-derived NGN2 neurons.	STAR protocols	Li, Aiqun; Cartwright, Samuel; Yu, Alex; Ho, Seok-Man; Schrode, Nadine; Deans, P J Michael; Matos, Marliette R; Garcia, Meilin Fernandez; Townsley, Kayla G; Zhang, Bin; Brennand, Kristen J	June 18, 2021	Not Determined
34140357	Create Study	Common genetic variation influencing human white matter microstructure.	Science (New York, N.Y.)	Zhao, Bingxin; Li, Tengfei; Yang, Yue; Wang, Xifeng; Luo, Tianyou; Shan, Yue; Zhu, Ziliang; Xiong, Di; Hauberg, Mads E; Bendl, Jaroslav; Fullard, John F; Roussos, Panagiotis; Li, Yun; Stein, Jason L; Zhu, Hongtu	June 18, 2021	Not Determined
34125905	Create Study	Cell type hierarchy reconstruction via reconciliation of multi-resolution cluster tree.	Nucleic acids research	Peng, Minshi; Wamsley, Brie; Elkins, Andrew G; Geschwind, Daniel H; Wei, Yuting; Roeder, Kathryn	September 20, 2021	Not Determined
34112972	Create Study	Genome-wide association identifies the first risk loci for psychosis in Alzheimer disease.	Molecular psychiatry	DeMichele-Sweet, Mary Ann A; Klei, Lambertus; Creese, Byron; Harwood, Janet C; Weamer, Elise A; McClain, Lora; Sims, Rebecca; Hernandez, Isabel; Moreno-Grau, Sonia; Tárraga, Lluís; Boada, Mercè; Alarcón-Martín, Emilio; Valero, Sergi; NIA-LOAD Family Based Study Consortium, Alzheimer’s Disease Genetics Consortium (ADGC); Liu, Yushi; Hooli, Basavaraj; Aarsland, Dag; Selbaek, Geir; Bergh, Sverre; Rongve, Arvid; Saltvedt, Ingvild; Skjellegrind, Håvard K; Engdahl, Bo; Stordal, Eystein; Andreassen, Ole A; Djurovic, Srdjan; Athanasiu, Lavinia; Seripa, Davide; Borroni, Barbara; Albani, Diego; Forloni, Gianluigi; Mecocci, Patrizia; Serretti, Alessandro; De Ronchi, Diana; Politis, Antonis; Williams, Julie; Mayeux, Richard; Foroud, Tatiana; Ruiz, Agustin; Ballard, Clive; Holmans, Peter; Lopez, Oscar L; Kamboh, M Ilyas; Devlin, Bernie; Sweet, Robert A	October 1, 2021	Not Determined
34100031	Create Study	IL10RB as a key regulator of COVID-19 host susceptibility and severity.	medRxiv : the preprint server for health sciences	Voloudakis, Georgios; Hoffman, Gabriel; Venkatesh, Sanan; Lee, Kyung Min; Dobrindt, Kristina; Vicari, James M; Zhang, Wen; Beckmann, Noam D; Jiang, Shan; Hoagland, Daisy; Bian, Jiantao; Gao, Lina; Corvelo, André; Cho, Kelly; Lee, Jennifer S; Iyengar, Sudha K; Luoh, Shiuh-Wen; Akbarian, Schahram; Striker, Robert; Assimes, Themistocles L; Schadt, Eric E; Merad, Miriam; tenOever, Benjamin R; Charney, Alexander W; Mount Sinai COVID-19 Biobank; VA Million Veteran Program COVID-19 Science Initiative; Brennand, Kristen J; Lynch, Julie A; Fullard, John F; Roussos, Panos	June 2, 2021	Not Determined
34021117	Create Study	Transcriptome-wide association study identifies new susceptibility genes and pathways for depression.	Translational psychiatry	Li, Xiaoyan; Su, Xi; Liu, Jiewei; Li, Huijuan; Li, Ming; 23andMe Research Team; Li, Wenqiang; Luo, Xiong-Jian	May 21, 2021	Not Determined
34017130	Create Study	Cell-type-specific effects of genetic variation on chromatin accessibility during human neuronal differentiation.	Nature neuroscience	Liang, Dan; Elwell, Angela L; Aygün, Nil; Krupa, Oleh; Wolter, Justin M; Kyere, Felix A; Lafferty, Michael J; Cheek, Kerry E; Courtney, Kenan P; Yusupova, Marianna; Garrett, Melanie E; Ashley-Koch, Allison; Crawford, Gregory E; Love, Michael I; de la Torre-Ubieta, Luis; Geschwind, Daniel H; Stein, Jason L	July 1, 2021	Not Determined
34010781	Create Study	Applying stem cells and CRISPR engineering to uncover the etiology of schizophrenia.	Current opinion in neurobiology	Michael Deans, Peter James; Brennand, Kristen J	August 1, 2021	Not Determined
33958802	Create Study	Brain gene co-expression networks link complement signaling with convergent synaptic pathology in schizophrenia.	Nature neuroscience	Kim, Minsoo; Haney, Jillian R; Zhang, Pan; Hernandez, Leanna M; Wang, Lee-Kai; Perez-Cano, Laura; Loohuis, Loes M Olde; de la Torre-Ubieta, Luis; Gandal, Michael J	June 1, 2021	Not Determined
33947435	Create Study	Genome-wide histone acetylation analysis reveals altered transcriptional regulation in the Parkinson''s disease brain.	Molecular neurodegeneration	Toker, Lilah; Tran, Gia T; Sundaresan, Janani; Tysnes, Ole-Bjørn; Alves, Guido; Haugarvoll, Kristoffer; Nido, Gonzalo S; Dölle, Christian; Tzoulis, Charalampos	May 5, 2021	Not Determined
33934884	Create Study	Sex Differences in Molecular Rhythms in the Human Cortex.	Biological psychiatry	Logan, Ryan W; Xue, Xiangning; Ketchesin, Kyle D; Hoffman, Gabriel; Roussos, Panos; Tseng, George; McClung, Colleen A; Seney, Marianne L	January 1, 2022	Not Determined
33931730	Create Study	A missense variant in NDUFA6 confers schizophrenia risk by affecting YY1 binding and NAGA expression.	Molecular psychiatry	Li, Yifan; Ma, Changguo; Li, Wenqiang; Yang, Yongfeng; Li, Xiaoyan; Liu, Jiewei; Wang, Junyang; Li, Shiwu; Liu, Yixing; Li, Kaiqin; Li, Jiao; Huang, Di; Chen, Rui; Lv, Luxian; Li, Ming; Luo, Xiong-Jian	November 1, 2021	Not Determined
33904573	Create Study	Identification of cell-type-specific marker genes from co-expression patterns in tissue samples.	Bioinformatics (Oxford, England)	Qiu, Yixuan; Wang, Jiebiao; Lei, Jing; Roeder, Kathryn	October 11, 2021	Not Determined
33837133	Create Study	Bayesian estimation of cell type-specific gene expression with prior derived from single-cell data.	Genome research	Wang, Jiebiao; Roeder, Kathryn; Devlin, Bernie	October 1, 2021	Not Determined
33805976	Create Study	Machine Learning Reduced Gene/Non-Coding RNA Features That Classify Schizophrenia Patients Accurately and Highlight Insightful Gene Clusters.	International journal of molecular sciences	Liu, Yichuan; Qu, Hui-Qi; Chang, Xiao; Tian, Lifeng; Qu, Jingchun; Glessner, Joseph; Sleiman, Patrick M A; Hakonarson, Hakon	March 25, 2021	Not Determined
33731968	Create Study	Covariance-based sample selection for heterogeneous data: Applications to gene expression and autism risk gene detection.	Journal of the American Statistical Association	Lin, Kevin Z; Liu, Han; Roeder, Kathryn	January 1, 2021	Not Determined
33684137	Create Study	MOSTWAS: Multi-Omic Strategies for Transcriptome-Wide Association Studies.	PLoS genetics	Bhattacharya, Arjun; Li, Yun; Love, Michael I	March 1, 2021	Not Determined
33658382	Create Study	Integration and transfer learning of single-cell transcriptomes via cFIT.	Proceedings of the National Academy of Sciences of the United States of America	Peng, Minshi; Li, Yue; Wamsley, Brie; Wei, Yuting; Roeder, Kathryn	March 9, 2021	Not Determined
33628435	Create Study	netDx: Software for building interpretable patient classifiers by multi-''omic data integration using patient similarity networks.	F1000Research	Pai, Shraddha; Weber, Philipp; Isserlin, Ruth; Kaka, Hussam; Hui, Shirley; Shah, Muhammad Ahmad; Giudice, Luca; Giugno, Rosalba; Nøhr, Anne Krogh; Baumbach, Jan; Bader, Gary D	January 1, 2020	Not Determined
33624750	Create Study	ESCO: single cell expression simulation incorporating gene co-expression.	Bioinformatics (Oxford, England)	Tian, Jinjin; Wang, Jiebiao; Roeder, Kathryn	August 25, 2021	Not Determined
33432232	Create Study	Analysis framework and experimental design for evaluating synergy-driving gene expression.	Nature protocols	Schrode, Nadine; Seah, Carina; Deans, P J Michael; Hoffman, Gabriel; Brennand, Kristen J	February 1, 2021	Not Determined
33422639	Create Study	Maternal autoimmunity and inflammation are associated with childhood tics and obsessive-compulsive disorder: Transcriptomic data show common enriched innate immune pathways.	Brain, behavior, and immunity	Jones, Hannah F; Han, Velda X; Patel, Shrujna; Gloss, Brian S; Soler, Nicolette; Ho, Alvin; Sharma, Suvasini; Kothur, Kavitha; Nosadini, Margherita; Wienholt, Louise; Hardwick, Chris; Barnes, Elizabeth H; Lim, Jacqueline R; Alshammery, Sarah; Nielsen, Timothy C; Wong, Melanie; Hofer, Markus J; Nassar, Natasha; Gold, Wendy; Brilot, Fabienne; Mohammad, Shekeeb S; Dale, Russell C	May 1, 2021	Not Determined
33263727	Create Study	Novel Risk Loci Associated With Genetic Risk for Bipolar Disorder Among Han Chinese Individuals: A Genome-Wide Association Study and Meta-analysis.	JAMA psychiatry	Li, Hui-Juan; Zhang, Chen; Hui, Li; Zhou, Dong-Sheng; Li, Yi; Zhang, Chu-Yi; Wang, Chuang; Wang, Lu; Li, Wenqiang; Yang, Yongfeng; Qu, Na; Tang, Jinsong; He, Ying; Zhou, Jun; Yang, Zihao; Li, Xingxing; Cai, Jun; Yang, Lu; Chen, Jun; Fan, Weixing; Tang, Wei; Tang, Wenxin; Jia, Qiu-Fang; Liu, Weiqing; Zhuo, Chuanjun; Song, Xueqin; Liu, Fang; Bai, Yan; Zhong, Bao-Liang; Zhang, Shu-Fang; Chen, Jing; Xia, Bin; Lv, Luxian; Liu, Zhongchun; Hu, Shaohua; Li, Xiao-Yan; Liu, Jie-Wei; Cai, Xin; Yao, Yong-Gang; Zhang, Yuyanan; Yan, Hao; Chang, Suhua; Zhao, Jing-Ping; Yue, Wei-Hua; Luo, Xiong-Jian; Chen, Xiaogang; Xiao, Xiao; Fang, Yiru; Li, Ming; GeseDNA Research Team	March 1, 2021	Not Determined
33246552	Create Study	Functional Genomics Identify a Regulatory Risk Variation rs4420550 in the 16p11.2 Schizophrenia-Associated Locus.	Biological psychiatry	Chang, Hong; Cai, Xin; Li, Hui-Juan; Liu, Wei-Peng; Zhao, Li-Juan; Zhang, Chu-Yi; Wang, Jun-Yang; Liu, Jie-Wei; Ma, Xiao-Lei; Wang, Lu; Yao, Yong-Gang; Luo, Xiong-Jian; Li, Ming; Xiao, Xiao	February 1, 2021	Not Determined
33199899	Create Study	Massively parallel techniques for cataloguing the regulome of the human brain.	Nature neuroscience	Townsley, Kayla G; Brennand, Kristen J; Huckins, Laura M	December 1, 2020	Not Determined
33149216	Create Study	Common schizophrenia risk variants are enriched in open chromatin regions of human glutamatergic neurons.	Nature communications	Hauberg, Mads E; Creus-Muncunill, Jordi; Bendl, Jaroslav; Kozlenkov, Alexey; Zeng, Biao; Corwin, Chuhyon; Chowdhury, Sarah; Kranz, Harald; Hurd, Yasmin L; Wegner, Michael; Børglum, Anders D; Dracheva, Stella; Ehrlich, Michelle E; Fullard, John F; Roussos, Panos	November 4, 2020	Not Determined
33046718	Create Study	Large eQTL meta-analysis reveals differing patterns between cerebral cortical and cerebellar brain regions.	Scientific data	Sieberts, Solveig K; Perumal, Thanneer M; Carrasquillo, Minerva M; Allen, Mariet; Reddy, Joseph S; Hoffman, Gabriel E; Dang, Kristen K; Calley, John; Ebert, Philip J; Eddy, James; Wang, Xue; Greenwood, Anna K; Mostafavi, Sara; CommonMind Consortium (CMC); The AMP-AD Consortium; Omberg, Larsson; Peters, Mette A; Logsdon, Benjamin A; De Jager, Philip L; Ertekin-Taner, Nilüfer; Mangravite, Lara M	October 12, 2020	Not Determined
33032641	Create Study	De novo missense variants disrupting protein-protein interactions affect risk for autism through gene co-expression and protein networks in neuronal cell types.	Molecular autism	Chen, Siwei; Wang, Jiebiao; Cicek, Ercument; Roeder, Kathryn; Yu, Haiyuan; Devlin, Bernie	October 8, 2020	Not Determined
32998684	Create Study	Embedding covariate adjustments in tree-based automated machine learning for biomedical big data analyses.	BMC bioinformatics	Manduchi, Elisabetta; Fu, Weixuan; Romano, Joseph D; Ruberto, Stefano; Moore, Jason H	October 1, 2020	Not Determined
32929078	Create Study	Chromatin accessibility mapping of the striatum identifies tyrosine kinase FYN as a therapeutic target for heroin use disorder.	Nature communications	Egervari, Gabor; Akpoyibo, Diana; Rahman, Tanni; Fullard, John F; Callens, James E; Landry, Joseph A; Ly, Annie; Zhou, Xianxiao; Warren, Noël; Hauberg, Mads E; Hoffman, Gabriel; Ellis, Randy; Ferland, Jacqueline-Marie N; Miller, Michael L; Keller, Eva; Zhang, Bin; Roussos, Panos; Hurd, Yasmin L	September 14, 2020	Not Determined
32914678	Create Study	KEOPS complex expression in the frontal cortex in major depression and schizophrenia.	The world journal of biological psychiatry : the official journal of the World Federation of Societies of Biological Psychiatry	Abel, Mackenzie E; Zhang, Xiaolu; Asah, Sophie M; Wolfinger, Alyssa; McCullumsmith, Robert E; O'Donovan, Sinead M	July 1, 2021	Not Determined
32900838	Create Study	Convergent lines of evidence support NOTCH4 as a schizophrenia risk gene.	Journal of medical genetics	Zhang, Yan; Li, Shiwu; Li, Xiaoyan; Yang, Yongfeng; Li, Wenqiang; Xiao, Xiao; Li, Ming; Lv, Luxian; Luo, XiongJian	October 1, 2021	Not Determined
32864809	Create Study	The Parkinson''s Disease Genome-Wide Association Study Locus Browser.	Movement disorders : official journal of the Movement Disorder Society	Grenn, Francis P; Kim, Jonggeol J; Makarious, Mary B; Iwaki, Hirotaka; Illarionova, Anastasia; Brolin, Kajsa; Kluss, Jillian H; Schumacher-Schuh, Artur F; Leonard, Hampton; Faghri, Faraz; Billingsley, Kimberley; Krohn, Lynne; Hall, Ashley; Diez-Fairen, Monica; Periñán, Maria Teresa; Foo, Jia Nee; Sandor, Cynthia; Webber, Caleb; Fiske, Brian K; Gibbs, J Raphael; Nalls, Mike A; Singleton, Andrew B; Bandres-Ciga, Sara; Reed, Xylena; Blauwendraat, Cornelis; International Parkinson's Disease Genomics Consortium (IPDGC)	November 1, 2020	Not Determined
32844198	Create Study	Genetic variants and functional pathways associated with resilience to Alzheimer''s disease.	Brain : a journal of neurology	Dumitrescu, Logan; Mahoney, Emily R; Mukherjee, Shubhabrata; Lee, Michael L; Bush, William S; Engelman, Corinne D; Lu, Qiongshi; Fardo, David W; Trittschuh, Emily H; Mez, Jesse; Kaczorowski, Catherine; Hernandez Saucedo, Hector; Widaman, Keith F; Buckley, Rachel; Properzi, Michael; Mormino, Elizabeth; Yang, Hyun-Sik; Harrison, Tessa; Hedden, Trey; Nho, Kwangsik; Andrews, Shea J; Tommet, Doug; Hadad, Niran; Sanders, R Elizabeth; Ruderfer, Douglas M; Gifford, Katherine A; Moore, Annah M; Cambronero, Francis; Zhong, Xiaoyuan; Raghavan, Neha S; Vardarajan, Badri; Alzheimer’s Disease Neuroimaging Initiative (ADNI); Alzheimer’s Disease Genetics Consortium (ADGC), A4 Study Team; Pericak-Vance, Margaret A; Farrer, Lindsay A; Wang, Li-San; Cruchaga, Carlos; Schellenberg, Gerard; Cox, Nancy J; Haines, Jonathan L; Keene, C Dirk; Saykin, Andrew J; Larson, Eric B; Sperling, Reisa A; Mayeux, Richard; Bennett, David A; Schneider, Julie A; Crane, Paul K; Jefferson, Angela L; Hohman, Timothy J	August 1, 2020	Not Determined
32840654	Create Study	APOE and TREM2 regulate amyloid-responsive microglia in Alzheimer''s disease.	Acta neuropathologica	Nguyen, Aivi T; Wang, Kui; Hu, Gang; Wang, Xuran; Miao, Zhen; Azevedo, Joshua A; Suh, EunRan; Van Deerlin, Vivianna M; Choi, David; Roeder, Kathryn; Li, Mingyao; Lee, Edward B	October 1, 2020	Not Determined
32826963	Create Study	Integrative analyses prioritize GNL3 as a risk gene for bipolar disorder.	Molecular psychiatry	Meng, Qingtuan; Wang, Le; Dai, Rujia; Wang, Jiawen; Ren, Zongyao; Liu, Sihan; Xia, Yan; Jiang, Yi; Duan, Fangyuan; Wang, Kangli; Liu, Chunyu; Chen, Chao	November 1, 2020	Not Determined
32791513	Create Study	Independent replications and integrative analyses confirm TRANK1 as a susceptibility gene for bipolar disorder.	Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology	Li, Wenqiang; Cai, Xin; Li, Hui-Juan; Song, Meng; Zhang, Chu-Yi; Yang, Yongfeng; Zhang, Luwen; Zhao, Lijuan; Liu, Weipeng; Wang, Lu; Shao, Minglong; Zhang, Yan; Zhang, Chen; Cai, Jun; Zhou, Dong-Sheng; Li, Xingxing; Hui, Li; Jia, Qiu-Fang; Qu, Na; Zhong, Bao-Liang; Zhang, Shu-Fang; Chen, Jing; Xia, Bin; Li, Yi; Song, Xueqin; Fan, Weixing; Tang, Wei; Tang, Wenxin; Tang, Jinsong; Chen, Xiaogang; Yue, Weihua; Zhang, Dai; Fang, Yiru; Xiao, Xiao; Li, Ming; Lv, Luxian; Chang, Hong	May 1, 2021	Not Determined
32730587	Create Study	Dream: powerful differential expression analysis for repeated measures designs.	Bioinformatics (Oxford, England)	Hoffman, Gabriel E; Roussos, Panos	April 19, 2021	Not Determined
32723400	Create Study	Integrative omics analysis identifies differential biological pathways that are associated with regional grey matter volume changes in major depressive disorder.	Psychological medicine	Sha, Zhiqiang; Banihashemi, Layla	April 1, 2022	Not Determined
32714365	Create Study	Impute.me: An Open-Source, Non-profit Tool for Using Data From Direct-to-Consumer Genetic Testing to Calculate and Interpret Polygenic Risk Scores.	Frontiers in genetics	Folkersen, Lasse; Pain, Oliver; Ingason, Andrés; Werge, Thomas; Lewis, Cathryn M; Austin, Jehannine	January 1, 2020	Not Determined
32712198	Create Study	Integration of CRISPR-engineering and hiPSC-based models of psychiatric genomics.	Molecular and cellular neurosciences	Matos, Marliette R; Ho, Seok-Man; Schrode, Nadine; Brennand, Kristen J	September 1, 2020	Not Determined
32652852	Create Study	Functional connectome fingerprinting accuracy in youths and adults is similar when examined on the same day and 1.5-years apart.	Human brain mapping	Jalbrzikowski, Maria; Liu, Fuchen; Foran, William; Klei, Lambertus; Calabro, Finnegan J; Roeder, Kathryn; Devlin, Bernie; Luna, Beatriz	October 15, 2020	Not Determined
32632206	Create Study	Older molecular brain age in severe mental illness.	Molecular psychiatry	Lin, Chien-Wei; Chang, Lun-Ching; Ma, Tianzhou; Oh, Hyunjung; French, Beverly; Puralewski, Rachel; Mathews, Fasil; Fang, Yusi; Lewis, David A; Kennedy, James L; Mueller, Daniel; Marshe, Victoria S; Jaffe, Andrew; Chen, Qiang; Ursini, Gianluca; Weinberger, Daniel; Newman, Anne B; Lenze, Eric J; Nikolova, Yuliya S; Tseng, George C; Sibille, Etienne	July 1, 2021	Not Determined
32533064	Create Study	Functional annotation of rare structural variation in the human brain.	Nature communications	Han, Lide; Zhao, Xuefang; Benton, Mary Lauren; Perumal, Thaneer; Collins, Ryan L; Hoffman, Gabriel E; Johnson, Jessica S; Sloofman, Laura; Wang, Harold Z; Stone, Matthew R; CommonMind Consortium; Brennand, Kristen J; Brand, Harrison; Sieberts, Solveig K; Marenco, Stefano; Peters, Mette A; Lipska, Barbara K; Roussos, Panos; Capra, John A; Talkowski, Michael; Ruderfer, Douglas M	June 12, 2020	Not Determined
32522875	Create Study	A selective inference approach for false discovery rate control using multiomics covariates yields insights into disease risk.	Proceedings of the National Academy of Sciences of the United States of America	Yurko, Ronald; G'Sell, Max; Roeder, Kathryn; Devlin, Bernie	June 30, 2020	Not Determined
32516938	Create Study	Cell Type-Specific In Vitro Gene Expression Profiling of Stem Cell-Derived Neural Models.	Cells	Gregory, James A; Hoelzli, Emily; Abdelaal, Rawan; Braine, Catherine; Cuevas, Miguel; Halpern, Madeline; Barretto, Natalie; Schrode, Nadine; Akbalik, Güney; Kang, Kristy; Cheng, Esther; Bowles, Kathryn; Lotz, Steven; Goderie, Susan; Karch, Celeste M; Temple, Sally; Goate, Alison; Brennand, Kristen J; Phatnani, Hemali	June 5, 2020	Not Determined
32313122	Create Study	If there is not one cure for schizophrenia, there may be many.	NPJ schizophrenia	Seah, Carina; Brennand, Kristen J	April 20, 2020	Not Determined
32268104	Create Study	Whole-Genome and RNA Sequencing Reveal Variation and Transcriptomic Coordination in the Developing Human Prefrontal Cortex.	Cell reports	Werling, Donna M; Pochareddy, Sirisha; Choi, Jinmyung; An, Joon-Yong; Sheppard, Brooke; Peng, Minshi; Li, Zhen; Dastmalchi, Claudia; Santpere, Gabriel; Sousa, André M M; Tebbenkamp, Andrew T N; Kaur, Navjot; Gulden, Forrest O; Breen, Michael S; Liang, Lindsay; Gilson, Michael C; Zhao, Xuefang; Dong, Shan; Klei, Lambertus; Cicek, A Ercument; Buxbaum, Joseph D; Adle-Biassette, Homa; Thomas, Jean-Leon; Aldinger, Kimberly A; O'Day, Diana R; Glass, Ian A; Zaitlen, Noah A; Talkowski, Michael E; Roeder, Kathryn; State, Matthew W; Devlin, Bernie; Sanders, Stephan J; Sestan, Nenad	April 7, 2020	Not Determined
32214206	Create Study	Regulatory mechanisms of major depressive disorder risk variants.	Molecular psychiatry	Li, Shiwu; Li, Yifan; Li, Xiaoyan; Liu, Jiewei; Huo, Yongxia; Wang, Junyang; Liu, Zhongchun; Li, Ming; Luo, Xiong-Jian	September 1, 2020	Not Determined
32199606	Create Study	Maternal Effects as Causes of Risk for Obsessive-Compulsive Disorder.	Biological psychiatry	Mahjani, Behrang; Klei, Lambertus; Hultman, Christina M; Larsson, Henrik; Devlin, Bernie; Buxbaum, Joseph D; Sandin, Sven; Grice, Dorothy E	June 15, 2020	Not Determined
32193514	Create Study	Identification of a functional human-unique 351-bp Alu insertion polymorphism associated with major depressive disorder in the 1p31.1 GWAS risk loci.	Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology	Liu, Weipeng; Li, Wenqiang; Cai, Xin; Yang, Zhihui; Li, Huijuan; Su, Xi; Song, Meng; Zhou, Dong-Sheng; Li, Xingxing; Zhang, Chen; Shao, Minglong; Zhang, Luwen; Yang, Yongfeng; Zhang, Yan; Zhao, Jingyuan; Chang, Hong; Yao, Yong-Gang; Fang, Yiru; Lv, Luxian; Li, Ming; Xiao, Xiao	June 1, 2020	Not Determined
32184385	Create Study	Further confirmation of netrin 1 receptor (DCC) as a depression risk gene via integrations of multi-omics data.	Translational psychiatry	Li, Hui-Juan; Qu, Na; Hui, Li; Cai, Xin; Zhang, Chu-Yi; Zhong, Bao-Liang; Zhang, Shu-Fang; Chen, Jing; Xia, Bin; Wang, Lu; Jia, Qiu-Fang; Li, Wei; Chang, Hong; Xiao, Xiao; Li, Ming; Li, Yi	March 17, 2020	Not Determined
32075678	Create Study	A chromosomal connectome for psychiatric and metabolic risk variants in adult dopaminergic neurons.	Genome medicine	Espeso-Gil, Sergio; Halene, Tobias; Bendl, Jaroslav; Kassim, Bibi; Ben Hutta, Gabriella; Iskhakova, Marina; Shokrian, Neda; Auluck, Pavan; Javidfar, Behnam; Rajarajan, Prashanth; Chandrasekaran, Sandhya; Peter, Cyril J; Cote, Alanna; Birnbaum, Rebecca; Liao, Will; Borrman, Tyler; Wiseman, Jennifer; Bell, Aaron; Bannon, Michael J; Roussos, Panagiotis; Crary, John F; Weng, Zhiping; Marenco, Stefano; Lipska, Barbara; Tsankova, Nadejda M; Huckins, Laura; Jiang, Yan; Akbarian, Schahram	February 19, 2020	Not Determined
32015466	Create Study	LncRNA-AC006129.1 reactivates a SOCS3-mediated anti-inflammatory response through DNA methylation-mediated CIC downregulation in schizophrenia.	Molecular psychiatry	Ni, Chaoying; Jiang, Wei; Wang, Zhongju; Wang, Zhuo; Zhang, Jian; Zheng, Xianzhen; Liu, Zelin; Ou, Haiyan; Jiang, Tingyun; Liang, Wenquan; Wu, Fengchun; Li, Qiyang; Hou, Yu; Yang, Qiong; Guo, Bo; Liu, Sihan; Li, Shuyun; Li, Shufen; Yang, Ence; Zhu, Xin-Hong; Huang, Xingbing; Wen, Zhexing; Zhao, Cunyou	August 1, 2021	Not Determined
32003784	Create Study	decorate: differential epigenetic correlation test.	Bioinformatics (Oxford, England)	Hoffman, Gabriel E; Bendl, Jaroslav; Girdhar, Kiran; Roussos, Panos	May 1, 2020	Not Determined
31981491	Create Study	Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.	Cell	Satterstrom, F Kyle; Kosmicki, Jack A; Wang, Jiebiao; Breen, Michael S; De Rubeis, Silvia; An, Joon-Yong; Peng, Minshi; Collins, Ryan; Grove, Jakob; Klei, Lambertus; Stevens, Christine; Reichert, Jennifer; Mulhern, Maureen S; Artomov, Mykyta; Gerges, Sherif; Sheppard, Brooke; Xu, Xinyi; Bhaduri, Aparna; Norman, Utku; Brand, Harrison; Schwartz, Grace; Nguyen, Rachel; Guerrero, Elizabeth E; Dias, Caroline; Autism Sequencing Consortium; iPSYCH-Broad Consortium; Betancur, Catalina; Cook, Edwin H; Gallagher, Louise; Gill, Michael; Sutcliffe, James S; Thurm, Audrey; Zwick, Michael E; Børglum, Anders D; State, Matthew W; Cicek, A Ercument; Talkowski, Michael E; Cutler, David J; Devlin, Bernie; Sanders, Stephan J; Roeder, Kathryn; Daly, Mark J; Buxbaum, Joseph D	February 6, 2020	Not Determined
31928911	Create Study	Age dependent association of inbreeding with risk for schizophrenia in Egypt.	Schizophrenia research	McClain, Lora; Mansour, Hader; Ibrahim, Ibtihal; Klei, Lambertus; Fathi, Warda; Wood, Joel; Kodavali, Chowdari; Maysterchuk, Alina; Wood, Shawn; El-Chennawi, Farha; Ibrahim, Nahed; Eissa, Ahmed; El-Bahaei, Wafaa; El Sayed, Hanan; Yassein, Amal; Tobar, Salwa; El-Boraie, Hala; El-Sheshtawy, Eman; Salah, Hala; Ali, Ahmed; Erdin, Serkan; Devlin, Bernie; Talkowski, Michael; Nimgaonkar, Vishwajit	February 1, 2020	Not Determined
31819045	Create Study	The depression GWAS risk allele predicts smaller cerebellar gray matter volume and reduced SIRT1 mRNA expression in Chinese population.	Translational psychiatry	Liu, Weipeng; Yan, Hao; Zhou, Danyang; Cai, Xin; Zhang, Yuyanan; Li, Shiyi; Li, Huijuan; Li, Shiwu; Zhou, Dong-Sheng; Li, Xingxing; Zhang, Chen; Sun, Yan; Dai, Jia-Pei; Zhong, Jingmei; Yao, Yong-Gang; Luo, Xiong-Jian; Fang, Yiru; Zhang, Dai; Ma, Yina; Yue, Weihua; Li, Ming; Xiao, Xiao	December 9, 2019	Not Determined
31619788	Create Study	Regulation of lifespan by neural excitation and REST.	Nature	Zullo, Joseph M; Drake, Derek; Aron, Liviu; O'Hern, Patrick; Dhamne, Sameer C; Davidsohn, Noah; Mao, Chai-An; Klein, William H; Rotenberg, Alexander; Bennett, David A; Church, George M; Colaiácovo, Monica P; Yankner, Bruce A	October 1, 2019	Not Determined
31563948	Create Study	Melanin Concentrating Hormone Signaling Deficits in Schizophrenia: Association With Memory and Social Impairments and Abnormal Sensorimotor Gating.	The international journal of neuropsychopharmacology	Vawter, Marquis P; Schulmann, Anton; Alhassen, Lamees; Alhassen, Wedad; Hamzeh, Abdul Rezzak; Sakr, Jasmine; Pauluk, Lucas; Yoshimura, Ryan; Wang, Xuejie; Dai, Qi; Sanathara, Nayna; Civelli, Olivier; Alachkar, Amal	March 10, 2020	Not Determined
31554518	Create Study	Divergent neuronal DNA methylation patterns across human cortical development reveal critical periods and a unique role of CpH methylation.	Genome biology	Price, Amanda J; Collado-Torres, Leonardo; Ivanov, Nikolay A; Xia, Wei; Burke, Emily E; Shin, Joo Heon; Tao, Ran; Ma, Liang; Jia, Yankai; Hyde, Thomas M; Kleinman, Joel E; Weinberger, Daniel R; Jaffe, Andrew E	September 26, 2019	Not Determined
31551426	Create Study	CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder.	Scientific data	Hoffman, Gabriel E; Bendl, Jaroslav; Voloudakis, Georgios; Montgomery, Kelsey S; Sloofman, Laura; Wang, Ying-Chih; Shah, Hardik R; Hauberg, Mads E; Johnson, Jessica S; Girdhar, Kiran; Song, Lingyun; Fullard, John F; Kramer, Robin; Hahn, Chang-Gyu; Gur, Raquel; Marenco, Stefano; Lipska, Barbara K; Lewis, David A; Haroutunian, Vahram; Hemby, Scott; Sullivan, Patrick; Akbarian, Schahram; Chess, Andrew; Buxbaum, Joseph D; Crawford, Greg E; Domenici, Enrico; Devlin, Bernie; Sieberts, Solveig K; Peters, Mette A; Roussos, Panos	September 24, 2019	Not Determined
31548722	Create Study	Synergistic effects of common schizophrenia risk variants.	Nature genetics	Schrode, Nadine; Ho, Seok-Man; Yamamuro, Kazuhiko; Dobbyn, Amanda; Huckins, Laura; Matos, Marliette R; Cheng, Esther; Deans, P J Michael; Flaherty, Erin; Barretto, Natalie; Topol, Aaron; Alganem, Khaled; Abadali, Sonya; Gregory, James; Hoelzli, Emily; Phatnani, Hemali; Singh, Vineeta; Girish, Deeptha; Aronow, Bruce; Mccullumsmith, Robert; Hoffman, Gabriel E; Stahl, Eli A; Morishita, Hirofumi; Sklar, Pamela; Brennand, Kristen J	October 1, 2019	Not Determined
31544924	Create Study	Functional interpretation of genetic variants using deep learning predicts impact on chromatin accessibility and histone modification.	Nucleic acids research	Hoffman, Gabriel E; Bendl, Jaroslav; Girdhar, Kiran; Schadt, Eric E; Roussos, Panos	November 18, 2019	Not Determined
31537791	Create Study	Discovering genetic interactions bridging pathways in genome-wide association studies.	Nature communications	Fang, Gang; Wang, Wen; Paunic, Vanja; Heydari, Hamed; Costanzo, Michael; Liu, Xiaoye; Liu, Xiaotong; VanderSluis, Benjamin; Oately, Benjamin; Steinbach, Michael; Van Ness, Brian; Schadt, Eric E; Pankratz, Nathan D; Boone, Charles; Kumar, Vipin; Myers, Chad L	September 19, 2019	Not Determined
31455887	Create Study	Global landscape and genetic regulation of RNA editing in cortical samples from individuals with schizophrenia.	Nature neuroscience	Breen, Michael S; Dobbyn, Amanda; Li, Qin; Roussos, Panos; Hoffman, Gabriel E; Stahl, Eli; Chess, Andrew; Sklar, Pamela; Li, Jin Billy; Devlin, Bernie; Buxbaum, Joseph D; CommonMind Consortium	September 1, 2019	Not Determined
31444360	Create Study	Integrative transcriptome imputation reveals tissue-specific and shared biological mechanisms mediating susceptibility to complex traits.	Nature communications	Zhang, Wen; Voloudakis, Georgios; Rajagopal, Veera M; Readhead, Ben; Dudley, Joel T; Schadt, Eric E; Björkegren, Johan L M; Kim, Yungil; Fullard, John F; Hoffman, Gabriel E; Roussos, Panos	August 23, 2019	Not Determined
31424081	Create Study	Resting-State Functional Network Organization Is Stable Across Adolescent Development for Typical and Psychosis Spectrum Youth.	Schizophrenia bulletin	Jalbrzikowski, Maria; Liu, Fuchen; Foran, William; Roeder, Kathryn; Devlin, Bernie; Luna, Beatriz	February 26, 2020	Not Determined
31400192	Create Study	Using multiple measurements of tissue to estimate subject- and cell-type-specific gene expression.	Bioinformatics (Oxford, England)	Wang, Jiebiao; Devlin, Bernie; Roeder, Kathryn	February 1, 2020	Not Determined
31399567	Create Study	Diurnal rhythms in gene expression in the prefrontal cortex in schizophrenia.	Nature communications	Seney, Marianne L; Cahill, Kelly; Enwright 3rd, John F; Logan, Ryan W; Huo, Zhiguang; Zong, Wei; Tseng, George; McClung, Colleen A	August 9, 2019	Not Determined
31168069	Create Study	The genomic basis of mood instability: identification of 46 loci in 363,705 UK Biobank participants, genetic correlation with psychiatric disorders, and association with gene expression and function.	Molecular psychiatry	Ward, Joey; Tunbridge, Elizabeth M; Sandor, Cynthia; Lyall, Laura M; Ferguson, Amy; Strawbridge, Rona J; Lyall, Donald M; Cullen, Breda; Graham, Nicholas; Johnston, Keira J A; Webber, Caleb; Escott-Price, Valentina; O'Donovan, Michael; Pell, Jill P; Bailey, Mark E S; Harrison, Paul J; Smith, Daniel J	November 1, 2020	Not Determined
31133542	Create Study	Identification of the primate-specific gene BTN3A2 as an additional schizophrenia risk gene in the MHC loci.	EBioMedicine	Wu, Yong; Bi, Rui; Zeng, Chunhua; Ma, Changguo; Sun, Chunli; Li, Jingzheng; Xiao, Xiao; Li, Ming; Zhang, Deng-Feng; Zheng, Ping; Sheng, Nengyin; Luo, Xiong-Jian; Yao, Yong-Gang	June 1, 2019	Not Determined
31109370	Create Study	Detection of circular RNA expression and related quantitative trait loci in the human dorsolateral prefrontal cortex.	Genome biology	Liu, Zelin; Ran, Yuan; Tao, Changyu; Li, Sichen; Chen, Jian; Yang, Ence	May 20, 2019	Not Determined
30976116	Create Study	Gene Expression Profiles Associated with Brain Aging are Altered in Schizophrenia.	Scientific reports	Sabunciyan, Sarven	April 11, 2019	Not Determined
30911161	Create Study	Gene expression imputation across multiple brain regions provides insights into schizophrenia risk.	Nature genetics	Huckins, Laura M; Dobbyn, Amanda; Ruderfer, Douglas M; Hoffman, Gabriel; Wang, Weiqing; Pardiñas, Antonio F; Rajagopal, Veera M; Als, Thomas D; T Nguyen, Hoang; Girdhar, Kiran; Boocock, James; Roussos, Panos; Fromer, Menachem; Kramer, Robin; Domenici, Enrico; Gamazon, Eric R; Purcell, Shaun; CommonMind Consortium; Schizophrenia Working Group of the Psychiatric Genomics Consortium; iPSYCH-GEMS Schizophrenia Working Group; Demontis, Ditte; Børglum, Anders D; Walters, James T R; O'Donovan, Michael C; Sullivan, Patrick; Owen, Michael J; Devlin, Bernie; Sieberts, Solveig K; Cox, Nancy J; Im, Hae Kyung; Sklar, Pamela; Stahl, Eli A	April 1, 2019	Not Determined
30824768	Create Study	Prioritizing Parkinson''s disease genes using population-scale transcriptomic data.	Nature communications	Li, Yang I; Wong, Garrett; Humphrey, Jack; Raj, Towfique	March 1, 2019	Not Determined
30737407	Create Study	Functional genomics reveal gene regulatory mechanisms underlying schizophrenia risk.	Nature communications	Huo, Yongxia; Li, Shiwu; Liu, Jiewei; Li, Xiaoyan; Luo, Xiong-Jian	February 8, 2019	Not Determined
30705251	Create Study	Comprehensive functional annotation of susceptibility SNPs prioritized 10 genes for schizophrenia.	Translational psychiatry	Niu, Hui-Min; Yang, Ping; Chen, Huan-Huan; Hao, Ruo-Han; Dong, Shan-Shan; Yao, Shi; Chen, Xiao-Feng; Yan, Han; Zhang, Yu-Jie; Chen, Yi-Xiao; Jiang, Feng; Yang, Tie-Lin; Guo, Yan	January 31, 2019	Not Determined
30655504	Create Study	Assessment of somatic single-nucleotide variation in brain tissue of cases with schizophrenia.	Translational psychiatry	Fullard, John F; Charney, Alexander W; Voloudakis, Georgios; Uzilov, Andrew V; Haroutunian, Vahram; Roussos, Panos	January 17, 2019	Not Determined
30635639	Create Study	Schizophrenia risk variants influence multiple classes of transcripts of sorting nexin 19 (SNX19).	Molecular psychiatry	Ma, Liang; Semick, Stephen A; Chen, Qiang; Li, Chao; Tao, Ran; Price, Amanda J; Shin, Joo Heon; Jia, Yankai; BrainSeq Consortium; Brandon, Nicholas J; Cross, Alan J; Hyde, Thomas M; Kleinman, Joel E; Jaffe, Andrew E; Weinberger, Daniel R; Straub, Richard E	April 1, 2020	Not Determined
30591030	Create Study	iMEGES: integrated mental-disorder GEnome score by deep neural network for prioritizing the susceptibility genes for mental disorders in personal genomes.	BMC bioinformatics	Khan, Atlas; Liu, Qian; Wang, Kai	December 28, 2018	Not Determined
30587579	Create Study	Semisoft clustering of single-cell data.	Proceedings of the National Academy of Sciences of the United States of America	Zhu, Lingxue; Lei, Jing; Klei, Lambertus; Devlin, Bernie; Roeder, Kathryn	January 8, 2019	Not Determined
30555922	Create Study	Using 3D epigenomic maps of primary olfactory neuronal cells from living individuals to understand gene regulation.	Science advances	Rhie, Suhn K; Schreiner, Shannon; Witt, Heather; Armoskus, Chris; Lay, Fides D; Camarena, Adrian; Spitsyna, Valeria N; Guo, Yu; Berman, Benjamin P; Evgrafov, Oleg V; Knowles, James A; Farnham, Peggy J	December 1, 2018	Not Determined
30545965	Create Study	The DGCR5 long noncoding RNA may regulate expression of several schizophrenia-related genes.	Science translational medicine	Meng, Qingtuan; Wang, Kangli; Brunetti, Tonya; Xia, Yan; Jiao, Chuan; Dai, Rujia; Fitzgerald, Dominic; Thomas, Amber; Jay, Lindsey; Eckart, Heather; Grennan, Kay; Imamura-Kawasawa, Yuka; Li, Mingfeng; Sestan, Nenad; White, Kevin P; Chen, Chao; Liu, Chunyu	December 19, 2018	Not Determined
30545964	Create Study	The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders.	Science translational medicine	Chen, Chao; Meng, Qingtuan; Xia, Yan; Ding, Chaodong; Wang, Le; Dai, Rujia; Cheng, Lijun; Gunaratne, Preethi; Gibbs, Richard A; Min, Shishi; Coarfa, Cristian; Reid, Jeffrey G; Zhang, Chunling; Jiao, Chuan; Jiang, Yi; Giase, Gina; Thomas, Amber; Fitzgerald, Dominic; Brunetti, Tonya; Shieh, Annie; Xia, Cuihua; Wang, Yongjun; Wang, Yunpeng; Badner, Judith A; Gershon, Elliot S; White, Kevin P; Liu, Chunyu	December 19, 2018	Not Determined
30545857	Create Study	Comprehensive functional genomic resource and integrative model for the human brain.	Science (New York, N.Y.)	Wang, Daifeng; Liu, Shuang; Warrell, Jonathan; Won, Hyejung; Shi, Xu; Navarro, Fabio C P; Clarke, Declan; Gu, Mengting; Emani, Prashant; Yang, Yucheng T; Xu, Min; Gandal, Michael J; Lou, Shaoke; Zhang, Jing; Park, Jonathan J; Yan, Chengfei; Rhie, Suhn Kyong; Manakongtreecheep, Kasidet; Zhou, Holly; Nathan, Aparna; Peters, Mette; Mattei, Eugenio; Fitzgerald, Dominic; Brunetti, Tonya; Moore, Jill; Jiang, Yan; Girdhar, Kiran; Hoffman, Gabriel E; Kalayci, Selim; Gümüş, Zeynep H; Crawford, Gregory E; PsychENCODE Consortium; Roussos, Panos; Akbarian, Schahram; Jaffe, Andrew E; White, Kevin P; Weng, Zhiping; Sestan, Nenad; Geschwind, Daniel H; Knowles, James A; Gerstein, Mark B	December 14, 2018	Not Determined
30545856	Create Study	Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.	Science (New York, N.Y.)	Gandal, Michael J; Zhang, Pan; Hadjimichael, Evi; Walker, Rebecca L; Chen, Chao; Liu, Shuang; Won, Hyejung; van Bakel, Harm; Varghese, Merina; Wang, Yongjun; Shieh, Annie W; Haney, Jillian; Parhami, Sepideh; Belmont, Judson; Kim, Minsoo; Moran Losada, Patricia; Khan, Zenab; Mleczko, Justyna; Xia, Yan; Dai, Rujia; Wang, Daifeng; Yang, Yucheng T; Xu, Min; Fish, Kenneth; Hof, Patrick R; Warrell, Jonathan; Fitzgerald, Dominic; White, Kevin; Jaffe, Andrew E; PsychENCODE Consortium; Peters, Mette A; Gerstein, Mark; Liu, Chunyu; Iakoucheva, Lilia M; Pinto, Dalila; Geschwind, Daniel H	December 14, 2018	Not Determined
30545855	Create Study	Spatiotemporal transcriptomic divergence across human and macaque brain development.	Science (New York, N.Y.)	Zhu, Ying; Sousa, André M M; Gao, Tianliuyun; Skarica, Mario; Li, Mingfeng; Santpere, Gabriel; Esteller-Cucala, Paula; Juan, David; Ferrández-Peral, Luis; Gulden, Forrest O; Yang, Mo; Miller, Daniel J; Marques-Bonet, Tomas; Imamura Kawasawa, Yuka; Zhao, Hongyu; Sestan, Nenad	December 14, 2018	Not Determined
30545854	Create Study	Integrative functional genomic analysis of human brain development and neuropsychiatric risks.	Science (New York, N.Y.)	Li, Mingfeng; Santpere, Gabriel; Imamura Kawasawa, Yuka; Evgrafov, Oleg V; Gulden, Forrest O; Pochareddy, Sirisha; Sunkin, Susan M; Li, Zhen; Shin, Yurae; Zhu, Ying; Sousa, André M M; Werling, Donna M; Kitchen, Robert R; Kang, Hyo Jung; Pletikos, Mihovil; Choi, Jinmyung; Muchnik, Sydney; Xu, Xuming; Wang, Daifeng; Lorente-Galdos, Belen; Liu, Shuang; Giusti-Rodríguez, Paola; Won, Hyejung; de Leeuw, Christiaan A; Pardiñas, Antonio F; BrainSpan Consortium; PsychENCODE Consortium; PsychENCODE Developmental Subgroup; Hu, Ming; Jin, Fulai; Li, Yun; Owen, Michael J; O'Donovan, Michael C; Walters, James T R; Posthuma, Danielle; Reimers, Mark A; Levitt, Pat; Weinberger, Daniel R; Hyde, Thomas M; Kleinman, Joel E; Geschwind, Daniel H; Hawrylycz, Michael J; State, Matthew W; Sanders, Stephan J; Sullivan, Patrick F; Gerstein, Mark B; Lein, Ed S; Knowles, James A; Sestan, Nenad	December 14, 2018	Not Determined
30545853	Create Study	Transcriptome and epigenome landscape of human cortical development modeled in organoids.	Science (New York, N.Y.)	Amiri, Anahita; Coppola, Gianfilippo; Scuderi, Soraya; Wu, Feinan; Roychowdhury, Tanmoy; Liu, Fuchen; Pochareddy, Sirisha; Shin, Yurae; Safi, Alexias; Song, Lingyun; Zhu, Ying; Sousa, André M M; PsychENCODE Consortium; Gerstein, Mark; Crawford, Gregory E; Sestan, Nenad; Abyzov, Alexej; Vaccarino, Flora M	December 14, 2018	Not Determined
30545852	Create Study	Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.	Science (New York, N.Y.)	An, Joon-Yong; Lin, Kevin; Zhu, Lingxue; Werling, Donna M; Dong, Shan; Brand, Harrison; Wang, Harold Z; Zhao, Xuefang; Schwartz, Grace B; Collins, Ryan L; Currall, Benjamin B; Dastmalchi, Claudia; Dea, Jeanselle; Duhn, Clif; Gilson, Michael C; Klei, Lambertus; Liang, Lindsay; Markenscoff-Papadimitriou, Eirene; Pochareddy, Sirisha; Ahituv, Nadav; Buxbaum, Joseph D; Coon, Hilary; Daly, Mark J; Kim, Young Shin; Marth, Gabor T; Neale, Benjamin M; Quinlan, Aaron R; Rubenstein, John L; Sestan, Nenad; State, Matthew W; Willsey, A Jeremy; Talkowski, Michael E; Devlin, Bernie; Roeder, Kathryn; Sanders, Stephan J	December 14, 2018	Not Determined
30545851	Create Study	Neuron-specific signatures in the chromosomal connectome associated with schizophrenia risk.	Science (New York, N.Y.)	Rajarajan, Prashanth; Borrman, Tyler; Liao, Will; Schrode, Nadine; Flaherty, Erin; Casiño, Charlize; Powell, Samuel; Yashaswini, Chittampalli; LaMarca, Elizabeth A; Kassim, Bibi; Javidfar, Behnam; Espeso-Gil, Sergio; Li, Aiqun; Won, Hyejung; Geschwind, Daniel H; Ho, Seok-Man; MacDonald, Matthew; Hoffman, Gabriel E; Roussos, Panos; Zhang, Bin; Hahn, Chang-Gyu; Weng, Zhiping; Brennand, Kristen J; Akbarian, Schahram	December 14, 2018	Not Determined
30532020	Create Study	Polygenic disruption of retinoid signalling in schizophrenia and a severe cognitive deficit subtype.	Molecular psychiatry	Reay, William R; Atkins, Joshua R; Quidé, Yann; Carr, Vaughan J; Green, Melissa J; Cairns, Murray J	April 1, 2020	Not Determined
30297968	Create Study	Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer''s disease susceptibility.	Nature genetics	Raj, Towfique; Li, Yang I; Wong, Garrett; Humphrey, Jack; Wang, Minghui; Ramdhani, Satesh; Wang, Ying-Chih; Ng, Bernard; Gupta, Ishaan; Haroutunian, Vahram; Schadt, Eric E; Young-Pearse, Tracy; Mostafavi, Sara; Zhang, Bin; Sklar, Pamela; Bennett, David A; De Jager, Philip L	November 1, 2018	Not Determined
30283037	Create Study	Adolescent exposure to Δ9-tetrahydrocannabinol alters the transcriptional trajectory and dendritic architecture of prefrontal pyramidal neurons.	Molecular psychiatry	Miller, Michael L; Chadwick, Benjamin; Dickstein, Dara L; Purushothaman, Immanuel; Egervari, Gabor; Rahman, Tanni; Tessereau, Chloe; Hof, Patrick R; Roussos, Panos; Shen, Li; Baxter, Mark G; Hurd, Yasmin L	April 1, 2019	Not Determined
30263963	Create Study	A unique role for DNA (hydroxy)methylation in epigenetic regulation of human inhibitory neurons.	Science advances	Kozlenkov, Alexey; Li, Junhao; Apontes, Pasha; Hurd, Yasmin L; Byne, William M; Koonin, Eugene V; Wegner, Michael; Mukamel, Eran A; Dracheva, Stella	September 1, 2018	Not Determined
30224808	Create Study	Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.	Nature neuroscience	Dong, Xianjun; Liao, Zhixiang; Gritsch, David; Hadzhiev, Yavor; Bai, Yunfei; Locascio, Joseph J; Guennewig, Boris; Liu, Ganqiang; Blauwendraat, Cornelis; Wang, Tao; Adler, Charles H; Hedreen, John C; Faull, Richard L M; Frosch, Matthew P; Nelson, Peter T; Rizzu, Patrizia; Cooper, Antony A; Heutink, Peter; Beach, Thomas G; Mattick, John S; Müller, Ferenc; Scherzer, Clemens R	October 1, 2018	Not Determined
30177255	Create Study	Transcriptomic Evidence for Alterations in Astrocytes and Parvalbumin Interneurons in Subjects With Bipolar Disorder and Schizophrenia.	Biological psychiatry	Toker, Lilah; Mancarci, Burak Ogan; Tripathy, Shreejoy; Pavlidis, Paul	December 1, 2018	Not Determined
30174778	Create Study	A UNIFIED STATISTICAL FRAMEWORK FOR SINGLE CELL AND BULK RNA SEQUENCING DATA.	The annals of applied statistics	Zhu, Lingxue; Lei, Jing; Devlin, Bernie; Roeder, Kathryn	March 1, 2018	Not Determined
30087329	Create Study	Evaluation of chromatin accessibility in prefrontal cortex of individuals with schizophrenia.	Nature communications	Bryois, Julien; Garrett, Melanie E; Song, Lingyun; Safi, Alexias; Giusti-Rodriguez, Paola; Johnson, Graham D; Shieh, Annie W; Buil, Alfonso; Fullard, John F; Roussos, Panos; Sklar, Pamela; Akbarian, Schahram; Haroutunian, Vahram; Stockmeier, Craig A; Wray, Gregory A; White, Kevin P; Liu, Chunyu; Reddy, Timothy E; Ashley-Koch, Allison; Sullivan, Patrick F; Crawford, Gregory E	August 7, 2018	Not Determined
30050107	Create Study	Developmental and genetic regulation of the human cortex transcriptome illuminate schizophrenia pathogenesis.	Nature neuroscience	Jaffe, Andrew E; Straub, Richard E; Shin, Joo Heon; Tao, Ran; Gao, Yuan; Collado-Torres, Leonardo; Kam-Thong, Tony; Xi, Hualin S; Quan, Jie; Chen, Qiang; Colantuoni, Carlo; Ulrich, William S; Maher, Brady J; Deep-Soboslay, Amy; BrainSeq Consortium; Cross, Alan J; Brandon, Nicholas J; Leek, Jeffrey T; Hyde, Thomas M; Kleinman, Joel E; Weinberger, Daniel R	August 1, 2018	Not Determined
30038276	Create Study	Cell-specific histone modification maps in the human frontal lobe link schizophrenia risk to the neuronal epigenome.	Nature neuroscience	Girdhar, Kiran; Hoffman, Gabriel E; Jiang, Yan; Brown, Leanne; Kundakovic, Marija; Hauberg, Mads E; Francoeur, Nancy J; Wang, Ying-Chih; Shah, Hardik; Kavanagh, David H; Zharovsky, Elizabeth; Jacobov, Rivka; Wiseman, Jennifer R; Park, Royce; Johnson, Jessica S; Kassim, Bibi S; Sloofman, Laura; Mattei, Eugenio; Weng, Zhiping; Sieberts, Solveig K; Peters, Mette A; Harris, Brent T; Lipska, Barbara K; Sklar, Pamela; Roussos, Panos; Akbarian, Schahram	August 1, 2018	Not Determined
29945882	Create Study	An atlas of chromatin accessibility in the adult human brain.	Genome research	Fullard, John F; Hauberg, Mads E; Bendl, Jaroslav; Egervari, Gabor; Cirnaru, Maria-Daniela; Reach, Sarah M; Motl, Jan; Ehrlich, Michelle E; Hurd, Yasmin L; Roussos, Panos	August 1, 2018	Not Determined
29892012	Create Study	An interactome perturbation framework prioritizes damaging missense mutations for developmental disorders.	Nature genetics	Chen, Siwei; Fragoza, Robert; Klei, Lambertus; Liu, Yuan; Wang, Jiebiao; Roeder, Kathryn; Devlin, Bernie; Yu, Haiyuan	July 1, 2018	Not Determined
29892006	Create Study	Brain Cell Type Specific Gene Expression and Co-expression Network Architectures.	Scientific reports	McKenzie, Andrew T; Wang, Minghui; Hauberg, Mads E; Fullard, John F; Kozlenkov, Alexey; Keenan, Alexandra; Hurd, Yasmin L; Dracheva, Stella; Casaccia, Patrizia; Roussos, Panos; Zhang, Bin	June 11, 2018	Not Determined
29805045	Create Study	Landscape of Conditional eQTL in Dorsolateral Prefrontal Cortex and Co-localization with Schizophrenia GWAS.	American journal of human genetics	Dobbyn, Amanda; Huckins, Laura M; Boocock, James; Sloofman, Laura G; Glicksberg, Benjamin S; Giambartolomei, Claudia; Hoffman, Gabriel E; Perumal, Thanneer M; Girdhar, Kiran; Jiang, Yan; Raj, Towfique; Ruderfer, Douglas M; Kramer, Robin S; Pinto, Dalila; CommonMind Consortium; Akbarian, Schahram; Roussos, Panos; Domenici, Enrico; Devlin, Bernie; Sklar, Pamela; Stahl, Eli A; Sieberts, Solveig K	June 7, 2018	Not Determined
29740122	Create Study	Differential activity of transcribed enhancers in the prefrontal cortex of 537 cases with schizophrenia and controls.	Molecular psychiatry	Hauberg, Mads E; Fullard, John F; Zhu, Lingxue; Cohain, Ariella T; Giambartolomei, Claudia; Misir, Ruth; Reach, Sarah; Johnson, Jessica S; Wang, Minghui; Mattheisen, Manuel; Børglum, Anders Dupont; Zhang, Bin; Sieberts, Solveig K; Peters, Mette A; Domenici, Enrico; Schadt, Eric E; Devlin, Bernie; Sklar, Pamela; Roeder, Kathryn; Roussos, Panos; CommonMind Consortium	November 1, 2019	Not Determined
29735686	Create Study	Transcriptomic context of DRD1 is associated with prefrontal activity and behavior during working memory.	Proceedings of the National Academy of Sciences of the United States of America	Fazio, Leonardo; Pergola, Giulio; Papalino, Marco; Di Carlo, Pasquale; Monda, Anna; Gelao, Barbara; Amoroso, Nicola; Tangaro, Sabina; Rampino, Antonio; Popolizio, Teresa; Bertolino, Alessandro; Blasi, Giuseppe	May 22, 2018	Not Determined
29700473	Create Study	An analytical framework for whole-genome sequence association studies and its implications for autism spectrum disorder.	Nature genetics	Werling, Donna M; Brand, Harrison; An, Joon-Yong; Stone, Matthew R; Zhu, Lingxue; Glessner, Joseph T; Collins, Ryan L; Dong, Shan; Layer, Ryan M; Markenscoff-Papadimitriou, Eirene; Farrell, Andrew; Schwartz, Grace B; Wang, Harold Z; Currall, Benjamin B; Zhao, Xuefang; Dea, Jeanselle; Duhn, Clif; Erdman, Carolyn A; Gilson, Michael C; Yadav, Rachita; Handsaker, Robert E; Kashin, Seva; Klei, Lambertus; Mandell, Jeffrey D; Nowakowski, Tomasz J; Liu, Yuwen; Pochareddy, Sirisha; Smith, Louw; Walker, Michael F; Waterman, Matthew J; He, Xin; Kriegstein, Arnold R; Rubenstein, John L; Sestan, Nenad; McCarroll, Steven A; Neale, Benjamin M; Coon, Hilary; Willsey, A Jeremy; Buxbaum, Joseph D; Daly, Mark J; State, Matthew W; Quinlan, Aaron R; Marth, Gabor T; Roeder, Kathryn; Devlin, Bernie; Talkowski, Michael E; Sanders, Stephan J	April 26, 2018	Not Determined
29691375	Create Study	THC exposure of human iPSC neurons impacts genes associated with neuropsychiatric disorders.	Translational psychiatry	Guennewig, Boris; Bitar, Maina; Obiorah, Ifeanyi; Hanks, James; O'Brien, Elizabeth A; Kaczorowski, Dominik C; Hurd, Yasmin L; Roussos, Panos; Brennand, Kristen J; Barry, Guy	April 25, 2018	Not Determined
29665782	Create Study	A direct regulatory link between microRNA-137 and SHANK2: implications for neuropsychiatric disorders.	Journal of neurodevelopmental disorders	de Sena Cortabitarte, Ana; Berkel, Simone; Cristian, Flavia-Bianca; Fischer, Christine; Rappold, Gudrun A	April 17, 2018	Not Determined
29632383	Create Study	Transcriptome-wide association study of schizophrenia and chromatin activity yields mechanistic disease insights.	Nature genetics	Gusev, Alexander; Mancuso, Nicholas; Won, Hyejung; Kousi, Maria; Finucane, Hilary K; Reshef, Yakir; Song, Lingyun; Safi, Alexias; Schizophrenia Working Group of the Psychiatric Genomics Consortium; McCarroll, Steven; Neale, Benjamin M; Ophoff, Roel A; O'Donovan, Michael C; Crawford, Gregory E; Geschwind, Daniel H; Katsanis, Nicholas; Sullivan, Patrick F; Pasaniuc, Bogdan; Price, Alkes L	April 1, 2018	Not Determined
29632380	Create Study	Heritability enrichment of specifically expressed genes identifies disease-relevant tissues and cell types.	Nature genetics	Finucane, Hilary K; Reshef, Yakir A; Anttila, Verneri; Slowikowski, Kamil; Gusev, Alexander; Byrnes, Andrea; Gazal, Steven; Loh, Po-Ru; Lareau, Caleb; Shoresh, Noam; Genovese, Giulio; Saunders, Arpiar; Macosko, Evan; Pollack, Samuela; Brainstorm Consortium; Perry, John R B; Buenrostro, Jason D; Bernstein, Bradley E; Raychaudhuri, Soumya; McCarroll, Steven; Neale, Benjamin M; Price, Alkes L	April 1, 2018	Not Determined
29579179	Create Study	A Bayesian framework for multiple trait colocalization from summary association statistics.	Bioinformatics (Oxford, England)	Giambartolomei, Claudia; Zhenli Liu, Jimmy; Zhang, Wen; Hauberg, Mads; Shi, Huwenbo; Boocock, James; Pickrell, Joe; Jaffe, Andrew E; CommonMind Consortium; Pasaniuc, Bogdan; Roussos, Panos	August 1, 2018	Not Determined
29439242	Create Study	Shared molecular neuropathology across major psychiatric disorders parallels polygenic overlap.	Science (New York, N.Y.)	Gandal, Michael J; Haney, Jillian R; Parikshak, Neelroop N; Leppa, Virpi; Ramaswami, Gokul; Hartl, Chris; Schork, Andrew J; Appadurai, Vivek; Buil, Alfonso; Werge, Thomas M; Liu, Chunyu; White, Kevin P; CommonMind Consortium; PsychENCODE Consortium; iPSYCH-BROAD Working Group; Horvath, Steve; Geschwind, Daniel H	February 9, 2018	Not Determined
29391398	Create Study	Non-coding RNA dysregulation in the amygdala region of schizophrenia patients contributes to the pathogenesis of the disease.	Translational psychiatry	Liu, Yichuan; Chang, Xiao; Hahn, Chang-Gyu; Gur, Raquel E; Sleiman, Patrick A M; Hakonarson, Hakon	February 2, 2018	Not Determined
29339482	Create Study	Global spectral clustering in dynamic networks.	Proceedings of the National Academy of Sciences of the United States of America	Liu, Fuchen; Choi, David; Xie, Lu; Roeder, Kathryn	January 30, 2018	Not Determined
29307494	Create Study	The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis.	Cell	de la Torre-Ubieta, Luis; Stein, Jason L; Won, Hyejung; Opland, Carli K; Liang, Dan; Lu, Daning; Geschwind, Daniel H	January 11, 2018	Not Determined
29263384	Create Study	Transcriptional signatures of schizophrenia in hiPSC-derived NPCs and neurons are concordant with post-mortem adult brains.	Nature communications	Hoffman, Gabriel E; Hartley, Brigham J; Flaherty, Erin; Ladran, Ian; Gochman, Peter; Ruderfer, Douglas M; Stahl, Eli A; Rapoport, Judith; Sklar, Pamela; Brennand, Kristen J	December 20, 2017	Not Determined
29184206	Create Study	A multiregional proteomic survey of the postnatal human brain.	Nature neuroscience	Carlyle, Becky C; Kitchen, Robert R; Kanyo, Jean E; Voss, Edward Z; Pletikos, Mihovil; Sousa, André M M; Lam, TuKiet T; Gerstein, Mark B; Sestan, Nenad; Nairn, Angus C	December 1, 2017	Not Determined
29155802	Create Study	Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa.	Molecular psychiatry	Huckins, L M; Hatzikotoulas, K; Southam, L; Thornton, L M; Steinberg, J; Aguilera-McKay, F; Treasure, J; Schmidt, U; Gunasinghe, C; Romero, A; Curtis, C; Rhodes, D; Moens, J; Kalsi, G; Dempster, D; Leung, R; Keohane, A; Burghardt, R; Ehrlich, S; Hebebrand, J; Hinney, A; Ludolph, A; Walton, E; Deloukas, P; Hofman, A; Palotie, A; Palta, P; van Rooij, F J A; Stirrups, K; Adan, R; Boni, C; Cone, R; Dedoussis, G; van Furth, E; Gonidakis, F; Gorwood, P; Hudson, J; Kaprio, J; Kas, M; Keski-Rahkonen, A; Kiezebrink, K; Knudsen, G-P; Slof-Op 't Landt, M C T; Maj, M; Monteleone, A M; Monteleone, P; Raevuori, A H; Reichborn-Kjennerud, T; Tozzi, F; Tsitsika, A; van Elburg, A; Eating Disorder Working Group of the Psychiatric Genomics Consortium; Collier, D A; Sullivan, P F; Breen, G; Bulik, C M; Zeggini, E	May 1, 2018	Not Determined
29112194	Create Study	Genome-wide association study identifies a novel locus for cannabis dependence.	Molecular psychiatry	Agrawal, A; Chou, Y-L; Carey, C E; Baranger, D A A; Zhang, B; Sherva, R; Wetherill, L; Kapoor, M; Wang, J-C; Bertelsen, S; Anokhin, A P; Hesselbrock, V; Kramer, J; Lynskey, M T; Meyers, J L; Nurnberger, J I; Rice, J P; Tischfield, J; Bierut, L J; Degenhardt, L; Farrer, L A; Gelernter, J; Hariri, A R; Heath, A C; Kranzler, H R; Madden, P A F; Martin, N G; Montgomery, G W; Porjesz, B; Wang, T; Whitfield, J B; Edenberg, H J; Foroud, T; Goate, A M; Bogdan, R; Nelson, E C	May 1, 2018	Not Determined
29100626	Create Study	Heritable Variation, With Little or No Maternal Effect, Accounts for Recurrence Risk to Autism Spectrum Disorder in Sweden.	Biological psychiatry	Yip, Benjamin Hon Kei; Bai, Dan; Mahjani, Behrang; Klei, Lambertus; Pawitan, Yudi; Hultman, Christina M; Grice, Dorothy E; Roeder, Kathryn; Buxbaum, Joseph D; Devlin, Bernie; Reichenberg, Abraham; Sandin, Sven	April 1, 2018	Not Determined
29083405	Create Study	Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate.	Nature genetics	Jasinska, Anna J; Zelaya, Ivette; Service, Susan K; Peterson, Christine B; Cantor, Rita M; Choi, Oi-Wa; DeYoung, Joseph; Eskin, Eleazar; Fairbanks, Lynn A; Fears, Scott; Furterer, Allison E; Huang, Yu S; Ramensky, Vasily; Schmitt, Christopher A; Svardal, Hannes; Jorgensen, Matthew J; Kaplan, Jay R; Villar, Diego; Aken, Bronwen L; Flicek, Paul; Nag, Rishi; Wong, Emily S; Blangero, John; Dyer, Thomas D; Bogomolov, Marina; Benjamini, Yoav; Weinstock, George M; Dewar, Ken; Sabatti, Chiara; Wilson, Richard K; Jentsch, J David; Warren, Wesley; Coppola, Giovanni; Woods, Roger P; Freimer, Nelson B	December 1, 2017	Not Determined
29081874	Create Study	TESTING HIGH-DIMENSIONAL COVARIANCE MATRICES, WITH APPLICATION TO DETECTING SCHIZOPHRENIA RISK GENES.	The annals of applied statistics	Zhu, Lingxue; Lei, Jing; Devlin, Bernie; Roeder, Kathryn	September 1, 2017	Not Determined
28892060	Create Study	A functional genomics predictive network model identifies regulators of inflammatory bowel disease.	Nature genetics	Peters, Lauren A; Perrigoue, Jacqueline; Mortha, Arthur; Iuga, Alina; Song, Won-Min; Neiman, Eric M; Llewellyn, Sean R; Di Narzo, Antonio; Kidd, Brian A; Telesco, Shannon E; Zhao, Yongzhong; Stojmirovic, Aleksandar; Sendecki, Jocelyn; Shameer, Khader; Miotto, Riccardo; Losic, Bojan; Shah, Hardik; Lee, Eunjee; Wang, Minghui; Faith, Jeremiah J; Kasarskis, Andrew; Brodmerkel, Carrie; Curran, Mark; Das, Anuk; Friedman, Joshua R; Fukui, Yoshinori; Humphrey, Mary Beth; Iritani, Brian M; Sibinga, Nicholas; Tarrant, Teresa K; Argmann, Carmen; Hao, Ke; Roussos, Panos; Zhu, Jun; Zhang, Bin; Dobrin, Radu; Mayer, Lloyd F; Schadt, Eric E	October 1, 2017	Not Determined
28686856	Create Study	10 Years of GWAS Discovery: Biology, Function, and Translation.	American journal of human genetics	Visscher, Peter M; Wray, Naomi R; Zhang, Qian; Sklar, Pamela; McCarthy, Mark I; Brown, Matthew A; Yang, Jian	July 6, 2017	Not Determined
28686855	Create Study	Large-Scale Identification of Common Trait and Disease Variants Affecting Gene Expression.	American journal of human genetics	Hauberg, Mads Engel; Zhang, Wen; Giambartolomei, Claudia; Franzén, Oscar; Morris, David L; Vyse, Timothy J; Ruusalepp, Arno; CommonMind Consortium; Sklar, Pamela; Schadt, Eric E; Björkegren, Johan L M; Roussos, Panos	July 6, 2017	Not Determined
28671686	Create Study	The methyltransferase SETDB1 regulates a large neuron-specific topological chromatin domain.	Nature genetics	Jiang, Yan; Loh, Yong-Hwee Eddie; Rajarajan, Prashanth; Hirayama, Teruyoshi; Liao, Will; Kassim, Bibi S; Javidfar, Behnam; Hartley, Brigham J; Kleofas, Lisa; Park, Royce B; Labonte, Benoit; Ho, Seok-Man; Chandrasekaran, Sandhya; Do, Catherine; Ramirez, Brianna R; Peter, Cyril J; C W, Julia T; Safaie, Brian M; Morishita, Hirofumi; Roussos, Panos; Nestler, Eric J; Schaefer, Anne; Tycko, Benjamin; Brennand, Kristen J; Yagi, Takeshi; Shen, Li; Akbarian, Schahram	August 1, 2017	Not Determined
28607526	Create Study	A unified framework for constructing, tuning and assessing photometric redshift density estimates in a selection bias setting.	Monthly notices of the Royal Astronomical Society	Freeman, P E; Izbicki, R; Lee, A B	July 1, 2017	Not Determined
28552197	Create Study	Large-Scale Identification of Common Trait and Disease Variants Affecting Gene Expression.	American journal of human genetics	Hauberg, Mads Engel; Zhang, Wen; Giambartolomei, Claudia; Franzén, Oscar; Morris, David L; Vyse, Timothy J; Ruusalepp, Arno; CommonMind Consortium; Sklar, Pamela; Schadt, Eric E; Björkegren, Johan L M; Roussos, Panos	June 1, 2017	Not Determined
28485405	Create Study	Investigating the neuroimmunogenic architecture of schizophrenia.	Molecular psychiatry	Birnbaum, R; Jaffe, A E; Chen, Q; Shin, J H; BrainSeq Consortium; Kleinman, J E; Hyde, T M; Weinberger, D R	May 1, 2018	Not Determined
28461698	Create Study	Genetic risk for schizophrenia and psychosis in Alzheimer disease.	Molecular psychiatry	DeMichele-Sweet, M A A; Weamer, E A; Klei, L; Vrana, D T; Hollingshead, D J; Seltman, H J; Sims, R; Foroud, T; Hernandez, I; Moreno-Grau, S; Tárraga, L; Boada, M; Ruiz, A; Williams, J; Mayeux, R; Lopez, O L; Sibille, E L; Kamboh, M I; Devlin, B; Sweet, R A	April 1, 2018	Not Determined
28431175	Create Study	minepath.org: a free interactive pathway analysis web server.	Nucleic acids research	Koumakis, Lefteris; Roussos, Panos; Potamias, George	July 3, 2017	Not Determined
28426285	Create Study	The Yin and Yang of Autism Genetics: How Rare De Novo and Common Variations Affect Liability.	Annual review of genomics and human genetics	Chaste, Pauline; Roeder, Kathryn; Devlin, Bernie	August 31, 2017	Not Determined
28335009	Create Study	Open chromatin profiling of human postmortem brain infers functional roles for non-coding schizophrenia loci.	Human molecular genetics	Fullard, John F; Giambartolomei, Claudia; Hauberg, Mads E; Xu, Ke; Voloudakis, Georgios; Shao, Zhiping; Bare, Christopher; Dudley, Joel T; Mattheisen, Manuel; Robakis, Nikolaos K; Haroutunian, Vahram; Roussos, Panos	May 15, 2017	Not Determined
28277564	Create Study	Analysis of Shared Haplotypes amongst Palauans Maps Loci for Psychotic Disorders to 4q28 and 5q23-q31.	Molecular neuropsychiatry	Bodea, Corneliu A; Middleton, Frank A; Melhem, Nadine M; Klei, Lambertus; Song, Youeun; Tiobech, Josepha; Marumoto, Pearl; Yano, Victor; Faraone, Stephen V; Roeder, Kathryn; Myles-Worsley, Marina; Devlin, Bernie; Byerley, William	February 1, 2017	Not Determined
28238358	Create Study	Integrating Gene Expression with Summary Association Statistics to Identify Genes Associated with 30 Complex Traits.	American journal of human genetics	Mancuso, Nicholas; Shi, Huwenbo; Goddard, Pagé; Kichaev, Gleb; Gusev, Alexander; Pasaniuc, Bogdan	March 2, 2017	Not Determined
28115742	Create Study	MEF2C transcription factor is associated with the genetic and epigenetic risk architecture of schizophrenia and improves cognition in mice.	Molecular psychiatry	Mitchell, A C; Javidfar, B; Pothula, V; Ibi, D; Shen, E Y; Peter, C J; Bicks, L K; Fehr, T; Jiang, Y; Brennand, K J; Neve, R L; Gonzalez-Maeso, J; Akbarian, S	January 1, 2018	Not Determined
27896968	Create Study	EXPLORING THE REPRODUCIBILITY OF PROBABILISTIC CAUSAL MOLECULAR NETWORK MODELS.	Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing	Cohain, Ariella; Divaraniya, Aparna A; Zhu, Kuixi; Scarpa, Joseph R; Kasarskis, Andrew; Zhu, Jun; Chang, Rui; Dudley, Joel T; Schadt, Eric E	January 1, 2017	Not Determined
27896963	Create Study	EXPLORING BRAIN TRANSCRIPTOMIC PATTERNS: A TOPOLOGICAL ANALYSIS USING SPATIAL EXPRESSION NETWORKS.	Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing	Kuncheva, Zhana; Krishnan, Michelle L; Montana, Giovanni	January 1, 2017	Not Determined
27863698	Create Study	Striatal H3K27 Acetylation Linked to Glutamatergic Gene Dysregulation in Human Heroin Abusers Holds Promise as Therapeutic Target.	Biological psychiatry	Egervari, Gabor; Landry, Joseph; Callens, James; Fullard, John F; Roussos, Panos; Keller, Eva; Hurd, Yasmin L	April 1, 2017	Not Determined
27732689	Create Study	Activity-Dependent Changes in Gene Expression in Schizophrenia Human-Induced Pluripotent Stem Cell Neurons.	JAMA psychiatry	Roussos, Panos; Guennewig, Boris; Kaczorowski, Dominik C; Barry, Guy; Brennand, Kristen J	November 1, 2016	Not Determined
27668389	Create Study	Gene expression elucidates functional impact of polygenic risk for schizophrenia.	Nature neuroscience	Fromer, Menachem; Roussos, Panos; Sieberts, Solveig K; Johnson, Jessica S; Kavanagh, David H; Perumal, Thanneer M; Ruderfer, Douglas M; Oh, Edwin C; Topol, Aaron; Shah, Hardik R; Klei, Lambertus L; Kramer, Robin; Pinto, Dalila; Gümüş, Zeynep H; Cicek, A Ercument; Dang, Kristen K; Browne, Andrew; Lu, Cong; Xie, Lu; Readhead, Ben; Stahl, Eli A; Xiao, Jianqiu; Parvizi, Mahsa; Hamamsy, Tymor; Fullard, John F; Wang, Ying-Chih; Mahajan, Milind C; Derry, Jonathan M J; Dudley, Joel T; Hemby, Scott E; Logsdon, Benjamin A; Talbot, Konrad; Raj, Towfique; Bennett, David A; De Jager, Philip L; Zhu, Jun; Zhang, Bin; Sullivan, Patrick F; Chess, Andrew; Purcell, Shaun M; Shinobu, Leslie A; Mangravite, Lara M; Toyoshiba, Hiroyoshi; Gur, Raquel E; Hahn, Chang-Gyu; Lewis, David A; Haroutunian, Vahram; Peters, Mette A; Lipska, Barbara K; Buxbaum, Joseph D; Schadt, Eric E; Hirai, Keisuke; Roeder, Kathryn; Brennand, Kristen J; Katsanis, Nicholas; Domenici, Enrico; Devlin, Bernie; Sklar, Pamela	November 1, 2016	Not Determined
27158905	Create Study	A human-specific AS3MT isoform and BORCS7 are molecular risk factors in the 10q24.32 schizophrenia-associated locus.	Nature medicine	Li, Ming; Jaffe, Andrew E; Straub, Richard E; Tao, Ran; Shin, Joo Heon; Wang, Yanhong; Chen, Qiang; Li, Chao; Jia, Yankai; Ohi, Kazutaka; Maher, Brady J; Brandon, Nicholas J; Cross, Alan; Chenoweth, Joshua G; Hoeppner, Daniel J; Wei, Huijun; Hyde, Thomas M; McKay, Ronald; Kleinman, Joel E; Weinberger, Daniel R	June 1, 2016	Not Determined
27134692	Create Study	NETWORK ASSISTED ANALYSIS TO REVEAL THE GENETIC BASIS OF AUTISM.	The annals of applied statistics	Liu, Li; Lei, Jing; Roeder, Kathryn	January 1, 2015	Not Determined
27113501	Create Study	Practical Guidelines for High-Resolution Epigenomic Profiling of Nucleosomal Histones in Postmortem Human Brain Tissue.	Biological psychiatry	Kundakovic, Marija; Jiang, Yan; Kavanagh, David H; Dincer, Aslihan; Brown, Leanne; Pothula, Venu; Zharovsky, Elizabeth; Park, Royce; Jacobov, Rivka; Magro, Isabelle; Kassim, Bibi; Wiseman, Jennifer; Dang, Kristen; Sieberts, Solveig K; Roussos, Panos; Fromer, Menachem; Harris, Brent; Lipska, Barbara K; Peters, Mette A; Sklar, Pamela; Akbarian, Schahram	January 15, 2017	Not Determined
27087321	Create Study	A Method to Exploit the Structure of Genetic Ancestry Space to Enhance Case-Control Studies.	American journal of human genetics	Bodea, Corneliu A; Neale, Benjamin M; Ripke, Stephan; International IBD Genetics Consortium; Daly, Mark J; Devlin, Bernie; Roeder, Kathryn	May 5, 2016	Not Determined
26827128	Create Study	Understanding the genetic liability to schizophrenia through the neuroepigenome.	Schizophrenia research	Fullard, John F; Halene, Tobias B; Giambartolomei, Claudia; Haroutunian, Vahram; Akbarian, Schahram; Roussos, Panos	November 1, 2016	Not Determined
26806987	Create Study	Localized Functional Principal Component Analysis.	Journal of the American Statistical Association	Chen, Kehui; Lei, Jing	January 1, 2015	Not Determined
26605881	Create Study	The PsychENCODE project.	Nature neuroscience	PsychENCODE Consortium; Akbarian, Schahram; Liu, Chunyu; Knowles, James A; Vaccarino, Flora M; Farnham, Peggy J; Crawford, Gregory E; Jaffe, Andrew E; Pinto, Dalila; Dracheva, Stella; Geschwind, Daniel H; Mill, Jonathan; Nairn, Angus C; Abyzov, Alexej; Pochareddy, Sirisha; Prabhakar, Shyam; Weissman, Sherman; Sullivan, Patrick F; State, Matthew W; Weng, Zhiping; Peters, Mette A; White, Kevin P; Gerstein, Mark B; Amiri, Anahita; Armoskus, Chris; Ashley-Koch, Allison E; Bae, Taejeong; Beckel-Mitchener, Andrea; Berman, Benjamin P; Coetzee, Gerhard A; Coppola, Gianfilippo; Francoeur, Nancy; Fromer, Menachem; Gao, Robert; Grennan, Kay; Herstein, Jennifer; Kavanagh, David H; Ivanov, Nikolay A; Jiang, Yan; Kitchen, Robert R; Kozlenkov, Alexey; Kundakovic, Marija; Li, Mingfeng; Li, Zhen; Liu, Shuang; Mangravite, Lara M; Mattei, Eugenio; Markenscoff-Papadimitriou, Eirene; Navarro, Fábio C P; North, Nicole; Omberg, Larsson; Panchision, David; Parikshak, Neelroop; Poschmann, Jeremie; Price, Amanda J; Purcaro, Michael; Reddy, Timothy E; Roussos, Panos; Schreiner, Shannon; Scuderi, Soraya; Sebra, Robert; Shibata, Mikihito; Shieh, Annie W; Skarica, Mario; Sun, Wenjie; Swarup, Vivek; Thomas, Amber; Tsuji, Junko; van Bakel, Harm; Wang, Daifeng; Wang, Yongjun; Wang, Kai; Werling, Donna M; Willsey, A Jeremy; Witt, Heather; Won, Hyejung; Wong, Chloe C Y; Wray, Gregory A; Wu, Emily Y; Xu, Xuming; Yao, Lijing; Senthil, Geetha; Lehner, Thomas; Sklar, Pamela; Sestan, Nenad	December 1, 2015	Not Determined
26575220	Create Study	Deciphering H3K4me3 broad domains associated with gene-regulatory networks and conserved epigenomic landscapes in the human brain.	Translational psychiatry	Dincer, A; Gavin, D P; Xu, K; Zhang, B; Dudley, J T; Schadt, E E; Akbarian, S	November 17, 2015	Not Determined
26402605	Create Study	Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.	Neuron	Sanders, Stephan J; He, Xin; Willsey, A Jeremy; Ercan-Sencicek, A Gulhan; Samocha, Kaitlin E; Cicek, A Ercument; Murtha, Michael T; Bal, Vanessa H; Bishop, Somer L; Dong, Shan; Goldberg, Arthur P; Jinlu, Cai; Keaney 3rd, John F; Klei, Lambertus; Mandell, Jeffrey D; Moreno-De-Luca, Daniel; Poultney, Christopher S; Robinson, Elise B; Smith, Louw; Solli-Nowlan, Tor; Su, Mack Y; Teran, Nicole A; Walker, Michael F; Werling, Donna M; Beaudet, Arthur L; Cantor, Rita M; Fombonne, Eric; Geschwind, Daniel H; Grice, Dorothy E; Lord, Catherine; Lowe, Jennifer K; Mane, Shrikant M; Martin, Donna M; Morrow, Eric M; Talkowski, Michael E; Sutcliffe, James S; Walsh, Christopher A; Yu, Timothy W; Autism Sequencing Consortium; Ledbetter, David H; Martin, Christa Lese; Cook, Edwin H; Buxbaum, Joseph D; Daly, Mark J; Devlin, Bernie; Roeder, Kathryn; State, Matthew W	September 23, 2015	Not Determined
25752243	Create Study	The autism-associated chromatin modifier CHD8 regulates other autism risk genes during human neurodevelopment.	Nature communications	Cotney, Justin; Muhle, Rebecca A; Sanders, Stephan J; Liu, Li; Willsey, A Jeremy; Niu, Wei; Liu, Wenzhong; Klei, Lambertus; Lei, Jing; Yin, Jun; Reilly, Steven K; Tebbenkamp, Andrew T; Bichsel, Candace; Pletikos, Mihovil; Sestan, Nenad; Roeder, Kathryn; State, Matthew W; Devlin, Bernie; Noonan, James P	March 10, 2015	Not Determined
25534755	Create Study	A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity?	Biological psychiatry	Chaste, Pauline; Klei, Lambertus; Sanders, Stephan J; Hus, Vanessa; Murtha, Michael T; Lowe, Jennifer K; Willsey, A Jeremy; Moreno-De-Luca, Daniel; Yu, Timothy W; Fombonne, Eric; Geschwind, Daniel; Grice, Dorothy E; Ledbetter, David H; Mane, Shrikant M; Martin, Donna M; Morrow, Eric M; Walsh, Christopher A; Sutcliffe, James S; Lese Martin, Christa; Beaudet, Arthur L; Lord, Catherine; State, Matthew W; Cook Jr, Edwin H; Devlin, Bernie	May 1, 2015	Not Determined
25453756	Create Study	A role for noncoding variation in schizophrenia.	Cell reports	Roussos, Panos; Mitchell, Amanda C; Voloudakis, Georgios; Fullard, John F; Pothula, Venu M; Tsang, Jonathan; Stahl, Eli A; Georgakopoulos, Anastasios; Ruderfer, Douglas M; Charney, Alexander; Okada, Yukinori; Siminovitch, Katherine A; Worthington, Jane; Padyukov, Leonid; Klareskog, Lars; Gregersen, Peter K; Plenge, Robert M; Raychaudhuri, Soumya; Fromer, Menachem; Purcell, Shaun M; Brennand, Kristen J; Robakis, Nikolaos K; Schadt, Eric E; Akbarian, Schahram; Sklar, Pamela	November 20, 2014	Not Determined
25382957	Create Study	Positive Semidefinite Rank-based Correlation Matrix Estimation with Application to Semiparametric Graph Estimation.	Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America	Zhao, Tuo; Roeder, Kathryn; Liu, Han	October 20, 2014	Not Determined
25363760	Create Study	Synaptic, transcriptional and chromatin genes disrupted in autism.	Nature	De Rubeis, Silvia; He, Xin; Goldberg, Arthur P; Poultney, Christopher S; Samocha, Kaitlin; Cicek, A Erucment; Kou, Yan; Liu, Li; Fromer, Menachem; Walker, Susan; Singh, Tarinder; Klei, Lambertus; Kosmicki, Jack; Shih-Chen, Fu; Aleksic, Branko; Biscaldi, Monica; Bolton, Patrick F; Brownfeld, Jessica M; Cai, Jinlu; Campbell, Nicholas G; Carracedo, Angel; Chahrour, Maria H; Chiocchetti, Andreas G; Coon, Hilary; Crawford, Emily L; Curran, Sarah R; Dawson, Geraldine; Duketis, Eftichia; Fernandez, Bridget A; Gallagher, Louise; Geller, Evan; Guter, Stephen J; Hill, R Sean; Ionita-Laza, Juliana; Jimenz Gonzalez, Patricia; Kilpinen, Helena; Klauck, Sabine M; Kolevzon, Alexander; Lee, Irene; Lei, Irene; Lei, Jing; Lehtimäki, Terho; Lin, Chiao-Feng; Ma'ayan, Avi; Marshall, Christian R; McInnes, Alison L; Neale, Benjamin; Owen, Michael J; Ozaki, Noriio; Parellada, Mara; Parr, Jeremy R; Purcell, Shaun; Puura, Kaija; Rajagopalan, Deepthi; Rehnström, Karola; Reichenberg, Abraham; Sabo, Aniko; Sachse, Michael; Sanders, Stephan J; Schafer, Chad; Schulte-Rüther, Martin; Skuse, David; Stevens, Christine; Szatmari, Peter; Tammimies, Kristiina; Valladares, Otto; Voran, Annette; Li-San, Wang; Weiss, Lauren A; Willsey, A Jeremy; Yu, Timothy W; Yuen, Ryan K C; DDD Study; Homozygosity Mapping Collaborative for Autism; UK10K Consortium; Cook, Edwin H; Freitag, Christine M; Gill, Michael; Hultman, Christina M; Lehner, Thomas; Palotie, Aaarno; Schellenberg, Gerard D; Sklar, Pamela; State, Matthew W; Sutcliffe, James S; Walsh, Christiopher A; Scherer, Stephen W; Zwick, Michael E; Barett, Jeffrey C; Cutler, David J; Roeder, Kathryn; Devlin, Bernie; Daly, Mark J; Buxbaum, Joseph D	November 13, 2014	Not Determined
25284784	Create Study	De novo insertions and deletions of predominantly paternal origin are associated with autism spectrum disorder.	Cell reports	Dong, Shan; Walker, Michael F; Carriero, Nicholas J; DiCola, Michael; Willsey, A Jeremy; Ye, Adam Y; Waqar, Zainulabedin; Gonzalez, Luis E; Overton, John D; Frahm, Stephanie; Keaney 3rd, John F; Teran, Nicole A; Dea, Jeanselle; Mandell, Jeffrey D; Hus Bal, Vanessa; Sullivan, Catherine A; DiLullo, Nicholas M; Khalil, Rehab O; Gockley, Jake; Yuksel, Zafer; Sertel, Sinem M; Ercan-Sencicek, A Gulhan; Gupta, Abha R; Mane, Shrikant M; Sheldon, Michael; Brooks, Andrew I; Roeder, Kathryn; Devlin, Bernie; State, Matthew W; Wei, Liping; Sanders, Stephan J	October 9, 2014	Not Determined
25086666	Create Study	A framework for the interpretation of de novo mutation in human disease.	Nature genetics	Samocha, Kaitlin E; Robinson, Elise B; Sanders, Stephan J; Stevens, Christine; Sabo, Aniko; McGrath, Lauren M; Kosmicki, Jack A; Rehnström, Karola; Mallick, Swapan; Kirby, Andrew; Wall, Dennis P; MacArthur, Daniel G; Gabriel, Stacey B; DePristo, Mark; Purcell, Shaun M; Palotie, Aarno; Boerwinkle, Eric; Buxbaum, Joseph D; Cook Jr, Edwin H; Gibbs, Richard A; Schellenberg, Gerard D; Sutcliffe, James S; Devlin, Bernie; Roeder, Kathryn; Neale, Benjamin M; Daly, Mark J	September 1, 2014	Not Determined
25038753	Create Study	Most genetic risk for autism resides with common variation.	Nature genetics	Gaugler, Trent; Klei, Lambertus; Sanders, Stephan J; Bodea, Corneliu A; Goldberg, Arthur P; Lee, Ann B; Mahajan, Milind; Manaa, Dina; Pawitan, Yudi; Reichert, Jennifer; Ripke, Stephan; Sandin, Sven; Sklar, Pamela; Svantesson, Oscar; Reichenberg, Abraham; Hultman, Christina M; Devlin, Bernie; Roeder, Kathryn; Buxbaum, Joseph D	August 1, 2014	Not Determined
24906019	Create Study	Transcriptional consequences of 16p11.2 deletion and duplication in mouse cortex and multiplex autism families.	American journal of human genetics	Blumenthal, Ian; Ragavendran, Ashok; Erdin, Serkan; Klei, Lambertus; Sugathan, Aarathi; Guide, Jolene R; Manavalan, Poornima; Zhou, Julian Q; Wheeler, Vanessa C; Levin, Joshua Z; Ernst, Carl; Roeder, Kathryn; Devlin, Bernie; Gusella, James F; Talkowski, Michael E	June 5, 2014	Not Determined
24587841	Create Study	REFINING GENETICALLY INFERRED RELATIONSHIPS USING TREELET COVARIANCE SMOOTHING.	The annals of applied statistics	Crossett, Andrew; Lee, Ann B; Klei, Lambertus; Devlin, Bernie; Roeder, Kathryn	June 27, 2013	Not Determined
24267886	Create Study	Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism.	Cell	Willsey, A Jeremy; Sanders, Stephan J; Li, Mingfeng; Dong, Shan; Tebbenkamp, Andrew T; Muhle, Rebecca A; Reilly, Steven K; Lin, Leon; Fertuzinhos, Sofia; Miller, Jeremy A; Murtha, Michael T; Bichsel, Candace; Niu, Wei; Cotney, Justin; Ercan-Sencicek, A Gulhan; Gockley, Jake; Gupta, Abha R; Han, Wenqi; He, Xin; Hoffman, Ellen J; Klei, Lambertus; Lei, Jing; Liu, Wenzhong; Liu, Li; Lu, Cong; Xu, Xuming; Zhu, Ying; Mane, Shrikant M; Lein, Ed S; Wei, Liping; Noonan, James P; Roeder, Kathryn; Devlin, Bernie; Sestan, Nenad; State, Matthew W	November 21, 2013	Not Determined
23743231	Create Study	Whole exome sequencing reveals minimal differences between cell line and whole blood derived DNA.	Genomics	Schafer, Chad M; Campbell, Nicholas G; Cai, Guiqing; Yu, Fei; Makarov, Vladimir; Yoon, Seungtai; Daly, Mark J; Gibbs, Richard A; Schellenberg, Gerard D; Devlin, Bernie; Sutcliffe, James S; Buxbaum, Joseph D; Roeder, Kathryn	October 1, 2013	Not Determined

helpcenter.collection.publications-tab

Collection - Publications

The number of Publications is displayed in parentheses next to the tab name. Clicking on any of the Publication Titles will open the Publication in a new internet browsing tab.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may mark a publication as either Relevant or Not Relevant in the Status column.

Frequently Asked Questions

How can I determine if a publication is relevant?

Publications are considered relevant to a collection when the data shared is directly related to the project or collection.
Where does the NDA get the publications?

PubMed, an online library containing journals, articles, and medical research. Sponsored by NiH and National Library of Medicine (NLM).

Glossary

Create Study

A link to the Create an NDA Study page that can be clicked to start creating an NDA Study with information such as the title, journal and authors automatically populated.
Not Determined Publication

Indicates that the publication has not yet been reviewed and/or marked as Relevant or Not Relevant so it has not been determined whether an NDA Study is expected.
Not Relevant Publication

A publication that is not based on data related to the aims of the grant/project associated with the Collection or not based on any data such as a review article and, therefore, an NDA Study is not expected to be created.
PubMed

PubMed provides citation information for biomedical and life sciences publications and is managed by the U.S. National Institutes of Health's National Library of Medicine.
PubMed ID

The PUBMed ID is the unique ID number for the publication as recorded in the PubMed database.
Relevant Publication

A publication that is based on data related to the aims of the grant/project associated with the Collection and, therefore, an NDA Study is expected to be created.

Contact NDA Help Desk

Data Expected List: Mandatory Data Structures

These data structures are mandatory for your NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

For NIMH HIV-related research that involves human research participants: Select the dictionary or dictionaries most appropriate for your research. If your research does not require all three data dictionaries, just ignore the ones you do not need. There is no need to delete extra data dictionaries from your NDA Collection. You can adjust the Targeted Enrollment column in the Data Expected tab to “0” for those unnecessary data dictionaries. At least one of the three data dictionaries must have a non-zero value.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
Research Subject and Pedigree	1	01/15/2024	0	05/15/2024	0	Approved

To create your project's Data Expected list, use the "+New Data Expected" to add or request existing structures and to request new Data Structures that are not in the NDA Data Dictionary.

If the Structure you need already exists, locate it and specify your dates and enrollment when adding it to your Data Expected list. If you require changes to the Structure you need, select the indicator stating "No, it requires changes to meet research needs," and upload a file containing your requested changes.

If the structure you need is not yet defined in the Data Dictionary, you can select "Upload Definition" and attach the necessary materials to request its creation.

When selecting the expected dates for your data, make sure to follow the standard Data Sharing Regimen and choose dates within the date ranges that correspond to your project start and end dates.

Please visit the Completing Your Data Expected Tutorial for more information.

Data Expected List: Data Structures per Research Aims

These data structures are specific to your research aims and should list all data structures in which data will be collected and submitted for this NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
SNP Array	1,024	01/15/2024	1,076	05/15/2024	1,076	Approved
RNA Sequencing	1,024	01/15/2024	1,014	05/15/2024	1,014	Approved
Whole Genome Sequencing	1,024	01/15/2024	773	05/15/2024	773	Approved
ATAC Sequencing	1,024	01/15/2024	269	05/15/2024	269	Approved
PsychENCODE/Common Mind Summary	1,024	01/15/2024	1,084	05/15/2024	1,084	Approved

Structure not yet defined

No Status history for this Data Expected has been recorded yet

helpcenter.collection.data-expected-tab

Collection - Data Expected

The Data Expected tab displays the list of all data that NDA expects to receive in association with the Collection as defined by the contributing researcher, as well as the dates for the expected initial upload of the data, and when it is first expected to be shared, or with the research community. Above the primary table of Data Expected, any publications determined to be relevant to the data within the Collection are also displayed - members of the contributing research group can use these to define NDA Studies, connecting those papers to underlying data in NDA.

The tab is used both as a reference for those accessing shared data, providing information on what is expected and when it will be shared, and as the primary tracking mechanism for contributing projects. It is used by both contributing primary researchers, secondary researchers, and NIH Program and Grants Management staff.

Researchers who are starting their project need to update their Data Expected list to include all the Data Structures they are collecting under their grant and set their initial submission and sharing schedule according to the NDA Data Sharing Regimen.

To add existing Data Structures from the Data Dictionary, to request new Data Structure that are not in the Dictionary, or to request changes to existing Data Structures, click "+New Data Expected".

For step-by-step instructions on how to add existing Data Structures, request changes to an existing Structure, or request a new Data Structure, please visit the Completing Your Data Expected Tutorial.

If you are a contributing researcher creating this list for the first time, or making changes to the list as your project progress, please note the following:

Although items you add to the list and changes you make are displayed, they are not committed to the system until you Save the entire page using the "Save" button at the bottom of your screen. Please Save after every change to ensure none of your work is lost.
If you attempt to add a new structure, the title you provide must be unique - if another structure exists with the same name your change will fail.
Adding a new structure to this list is the only way to request the creation of a new Data Dictionary definition.

Frequently Asked Questions

What is an NDA Data Structure?

An NDA Data Structure is comprised of multiple Data Elements to make up an electronic definition of an assessment, measure, questionnaire, etc will have a corresponding Data Structure.
What is the NDA Data Dictionary?

The NDA Data Dictionary is comprised of electronic definitions known as Data Structures.

Glossary

Analyzed Data

Data specific to the primary aims of the research being conducted (e.g. outcome measures, other dependent variables, observations, laboratory results, analyzed images, volumetric data, etc.) including processed images.
Data Item

Items listed on the Data Expected list in the Collection which may be an individual and discrete Data Structure, Data Structure Category, or Data Structure Group.
Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Structure Category

An NDA term describing the affiliation of a Data Structure to a Category, which may be disease/disorder or diagnosis related (Depression, ADHD, Psychosis), specific to data type (MRI, eye tracking, omics), or type of data (physical exam, IQ).
Data Structure Group

A Data Item listed on the Data Expected tab of a Collection that indicates a group of Data Structures (e.g., ADOS or SCID) for which data may be submitted instead of a specific Data Structure identified by version, module, edition, etc. For example, the ADOS Data Structure Category includes every ADOS Data Structure such as ADOS Module 1, ADOS Module 2, ADOS Module 1 - 2nd Edition, etc. The SCID Data Structure Group includes every SCID Data Structure such as SCID Mania, SCID V Mania, SCID PTSD, SCID-V Diagnosis, and more.
Evaluated Data

A new Data Structure category, Evaluated Data is analyzed data resulting from the use of computational pipelines in the Cloud and can be uploaded directly back to a miNDAR database. Evaluated Data is expected to be listed as a Data Item in the Collection's Data Expected Tab.
Imaging Data

Imaging+ is an NDA term which encompasses all imaging related data including, but not limited to, images (DTI, MRI, PET, Structural, Spectroscopy, etc.) as well as neurosignal data (EEG, fMRI, MEG, EGG, eye tracking, etc.) and Evaluated Data.
Initial Share Date

Initial Submission and Initial Share dates should be populated according to the NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data will be shared with authorized users upon publication (via an NDA Study) or 1-2 years after the grant end date specified on the first Notice of Award, as defined in the applicable Data Sharing Terms and Conditions.
Initial Submission Date

Initial Submission and Initial Share dates should be populated according to these NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data for all subjects is not expected on the Initial Submission Date and modifications may be made as necessary based on the project's conduct.
Research Subject and Pedigree

An NDA created Data Structure used to convey basic information about the subject such as demographics, pedigree (links family GUIDs), diagnosis/phenotype, and sample location that are critical to allow for easier querying of shared data.
Submission Cycle

The NDA has two Submission Cycles per year - January 15 and July 15.
Submission Exemption

An interface to notify NDA that data may not be submitted during the upcoming/current submission cycle.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Associated Studies

Studies that have been defined using data from a Collection are important criteria to determine the value of data shared. The number of subjects column displays the counts from this Collection that are included in a Study, out of the total number of subjects in that study. The Data Use column represents whether or not the study is a primary analysis of the data or a secondary analysis. State indicates whether the study is private or shared with the research community.

Study NameFilter by Study Name	AbstractFilter by Abstract	Collection/Study SubjectsFilter by Collection/Study Subjects	Data UsageFilter by Data Usage	StateFilter by State
No records found.

helpcenter.collection.associated-studies-tab

Collection - Associated Studies

Clicking on the Study Title will open the study details in a new internet browser tab. The Abstract is available for viewing, providing the background explanation of the study, as provided by the Collection Owner.

Primary v. Secondary Analysis: The Data Usage column will have one of these two choices. An associated study that is listed as being used for Primary Analysis indicates at least some and potentially all of the data used was originally collected by the creator of the NDA Study. Secondary Analysis indicates the Study owner was not involved in the collection of data, and may be used as supporting data.

Private v. Shared State: Studies that remain private indicate the associated study is only available to users who are able to access the collection. A shared study is accessible to the general public.

Frequently Asked Questions

How do I associate a study to my collection?

Studies are associated to the Collection automatically when the data is defined in the Study.

Glossary

Associated Studies Tab

A tab in a Collection that lists the NDA Studies that have been created using data from that Collection including both Primary and Secondary Analysis NDA Studies.

Contact NDA Help Desk

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