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NDA

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NDA Help Center
Filter Cart
Viewable at the top right of NDA pages, the Filter Cart is a temporary holder for filters and data they select. Filters are added to the Workspace first, before being submitted to The Filter Cart. Data selected by filters in the Filter Cart can be added to a Data Package or an NDA Study from the Data Packaging Page, by clicking the 'Create Data Package / Add Data to Study' button.

The filter cart supports combining multiple filters together, and depending on filter type will use "AND" or "OR" when combining filters.

Multiple selections from the same filter type will result in those selections being applied with an ‘OR’ condition. For example, if you add an NDA Collection Filter with selections for both collections 2112 and 2563 to an empty Workspace, the subjects from NDA Collection 2112 ‘OR’ NDA Collection 2563 will be added to your Workspace even if a subject is in both NDA Collections. You can then add other NDA Collections to your Workspace which further extends the ‘OR’ condition.

If a different filter type is added to your Workspace, or a filter has already been submitted to the Filter Cart, the operation then performs a logical ‘AND’ operation. This means that given the subjects returned from the first filter, only those subjects that matched the first filter are returned by the second filter (i.e., subjects that satisfied both filters).

When combining other filters with the GUID filter, please note the GUID filter should be added last. Otherwise, preselected data may be lost. For example, a predefined filter from Featured Datasets may select a subset of data available for a subject. When combined with a GUID filter for the same subject, the filter cart will contain all data available from that subject, data structure, and dataset; this may be more data than was selected in the predefined filter for that subject. Again, you should add the GUID Filter as the last filter to your cart. This ensures 'AND' logic between filters and will limit results to the subjects, data structures, and datasets already included in your filter cart.

Note that only the subjects specific to your filter will be added to your Filter Cart and only on data shared with the research community. Other data for those same subjects may exist (i.e., within another NDA Collection, associated with a data structure that was not requested in the query, etc.). So, users should select ‘Find all Subjects Data’ to identify all data for those specific subjects.

Additional Tips:

You may query the data without an account, but to gain access you will need to create an NDA user account and apply for access. Most data access requires that you or your lab are sponsored by an NIH recognized institution with Federal Wide Assurance (FWA). Without access, you will not be able to obtain individual-level data.

Once you have selected data of interest you can:

Create a data package - This allows you to specify format for access/download

Assign to Study Cohort - Associate the data to an NDA Study allowing for a DOI to be generated and the data to be linked directly to a finding, publication, or data release.

Find All Subject Data - Depending on filter types being used, not all data associated with a subject will be selected. Data may be restricted by data structure, NDA Collection, or outcome variables (e.g., NDA Study). ‘Find All Data’ expands the filter criteria by replacing all filters in your Filter Cart with a single Query by GUID filter for all subjects selected by those filters.

Please Note:

When running a query, it may take a moment to populate the Filter Cart. Queries happen in the background so you can define other queries during this time.

When you add your first filter, all data associated with your query will be added to the Filter Cart (e.g., a Concept, an NDA Collection, a Data Structure/Element, etc.). As you add additional filters, they will also display in the Filter Cart. Only the name of filter will be shown in the Filter Cart, not the underlying structures.

Information about the contents of the Filter Cart can be seen by clicking "Edit”.

Once your results appear in the Filter Cart, you can create a data package or assign subjects to a study by selecting the 'Package/Assign to Study' option. You can also 'Edit' or 'Clear' filters.
Frequently Asked Questions

What is a Filter Cart?

Viewable at the top right of NDA pages, the Filter Cart is a temporary holder of data identified by the user, through querying or browsing, as being of some potential interest. The Filter Cart is where you send the data from your Workspace after it has been filtered.

What do I do after filters are added to the Filter Cart?

After filters are added to the Filter Cart, users have options to ‘Create a Package’ for download, ‘Associate to Study Cohort’, or ‘Find All Subject Data’. Selecting ‘Find All Subject Data’ identifies and pulls all data for the subjects into the Filter Cart. Choosing ‘Create a Package’ allows users to package and name their query information for download. Choosing ‘Associate to Study Cohort’ gives users the opportunity to choose the Study Cohort they wish to associate this data.

Are there limitations on the amount of data a user can download?

NDA limits the rate at which individual users can transfer data out of Amazon Web Services (AWS) S3 Object storage to non-AWS internet addresses. All users have a download limit of 20 Terabytes. This limit applies to the volume of data an individual user can transfer within a 30-day window. Only downloads to non-AWS internet addresses will be counted against the limit.

How does Filter Cart Boolean logic work?

The Filter Cart currently employs basic AND/OR Boolean logic. A single filter may contain multiple selections for that filter type, e.g., a single NDA Study filter might contain NDA Study 1 and NDA Study 2. A subject that is in EITHER 1 OR 2 will be returned. Adding multiple filters to the cart, regardless of type, will AND the result of each filter. If NDA Study 1 and NDA Study 2 are added as individual filters, data for a subject will only be selected if the subject is included in BOTH 1 AND 2.

When combining other filters with the GUID filter, please note the GUID filter should be added last. Otherwise, preselected data may be lost. For example, a predefined filter from Featured Datasets may select a subset of data available for a subject. When combined with a GUID filter for the same subject, the filter cart will contain all data available from that subject, data structure, and dataset; this may be more data than was selected in the predefined filter for that subject. Again, you should add the GUID Filter as the last filter to your cart. This ensures 'AND' logic between filters and will limit results to the subjects, data structures, and datasets already included in your filter cart.
Glossary

Workspace

The Workspace within the General Query Tool is a holding area where you can review your pending filters prior to adding them to Filter Cart. Therefore, the first step in accessing data is to select one or more items and move it into the Workspace.

Filter Cart

Viewable at the top right of NDA pages, the Filter Cart is a temporary holder of data identified by the user through querying or browsing as being of some potential interest. The Filter Cart adds data using an AND condition. The opportunity to further refine data to determine what will be downloaded or sent to a miNDAR is available on the Data Packaging Page, the next step after the Filter Cart. Subsequent access to data is restricted by User Permission or Privilege; however Filter Cart use is not.
Contact NDA Help Desk

Attention: NDA Data Packaging, Downloading, and miNDAR Databases Available by January 17, 2025

Experiment ID:

Experiment Type:

Experiment Name:

BIOS scans

Associated Collections:

[2336] - Children of Bipolar Parents: A High Risk Follow Up Study (also known as Bipolar Offspring Study - BIOS)

Acquisition

Equipment/Scanner:

3T GE MR750
Elekta
- Neuromag TRIUX whole-head MEG system
GE Healthcare
- 1.5T
  - Brivo MR355
  - Optima MR450w
  - Signa HDxt
- 3T
  - Discovery MR750
  - Discovery MR750w
  - Signa HDxt
  - Signa Premier
  - Signa UHP
GE Sig 3T Magnus
GE Sign 3T Magnus
GE Signa
GE Signa 3T
GE Signa 3T Magnus
GE Signa 7T
GE Signa 7T Magnus
GE Signa Magnus
GE Signal T Magnus
General Electric Signa 3T Magnus
Gowerlabs NTS system
Hitachi
- 1.5T
  - Echelon
MiE Scintronic PET Scanner
Ocean Optics
- QE-Pro CCD Spectrometer
PC monitor screen
PET/CT
Philips Healthcare
- 1.5T
  - Achieve A-series
  - Ingenia
- 3T
  - Achieva
  - Achieva X-series
  - Ingenia
  - Ingenia Elition
Siemens
- 1.5T
  - MAGNETOM Aera
  - MAGNETOM Avanto
  - MAGNETOM ESSENZA
- 3T
  - MAGNETOM Allegra
  - MAGNETOM Prisma
  - MAGNETOM Prisma Fit
  - MAGNETOM Skyra
  - MAGNETOM Skyra Fit
  - MAGNETOM Spectra
  - MAGNETOM Tim Trio
  - MAGNETOM Verio
- 7T
  - Custom Investigational Device 7T
  - Magnetom Terra
- 7T Siemens MAGNETOM
- MR-PET
  - Biograph mMR
- Siemens 3T Prisma
Siemens Vida 3T
Signa 3T Magnus
Toshiba
- 1.5T
  - Vantage Atlas
  - Vantage Titan
- 3T
  - Vantage Titan
United Imaging 550 Digital High-Resolution PET/CT

Software:

25\LX\MR Software release:DV25.0_R02_1549.b
27\LX\MR Software release:DV26.0_R01_1725.a
AcqKnowledge 5.0.7
Audacity
BioPac Systems
- AcqKnowledge
  - Version 4.2
  - Version 4.3.1
  - Version 4.4
  - Version 5.0.2
  - Version 5.0.5
Brain Innovation
- BrainVoyager QX
- TMS Neuronavigator
- Turbo-BrainVoyager
Brain Resource
- iSPOT
BrainSuite
Cedrus
- Superlab 5.0
dcm2bids
Delphi
Elekta
- MaxFilter
Empirisoft
- DirectRT
GE Healthcare
- Discovery MR 750
  - 24\LX\MR Software release:DV24.0_R01_1344.a
  - 27\LX\MR Software release:DV25.1_R01_1617.b
  - 27\LX\MR Software release:DV25.1_R02_1649.a
  - 27\LX\MR Software release:DV26.0_R02_1810.b
  - 27_LX_MR_Software_release:DV26.0_EB_1707.b
  - 27_LX_MR_Software_release:DV26.0_R01_1725.a
  - 27_LX_MR_Software_release:DV26.0_R03_1831.b
  - DV250_1549b
  - DV26.0_R04_1921.a
- Signa
  - 14\LX\MR Software
    - release:14.0_M4_0629.a
  - 15/LX/15.0_M4A_0947.a
  - RX27 Rev 3.0
- Signa Premier
  - 27\LX\MR Software release:RX27.0_R03_1850.a
  - 28\LX\MR Software release:RX28.0_R02_1946.a
  - 28\LX\MR Software release:RX28.0_R04_2020.b
  - 28\LX\MR Software release:RX28.0_R04_UHP3T_2111.a
  - 28\LX\MR Software release:RX28.0_R05_2035.a
  - 28\LX\Product Software Version:RX29.0_R01_2034.a
  - RX27.0
  - RX27_R03
Gowerlabs NTS (NTS-2.14.1)
Inquisit
- 6.3.3
Javascript Nemo
Magnetom 3T B17 Syngo
MATLAB
Medoc
- MMS Arbel 6.4.0.30.36.2
MIRTK
Neurobehavioral Systems
- Presentation
None
NordicNeuroLab
- nordicBrainEx
- nordicICE
Not Applicable to PET
Ocean Optics
- OceanView 1.6.7
Open Source or Academic
- AFNI
- ArtRepair
- BioImage Suite
- Cigal
- dcm2niix
- Domino
- FBIRN Tools
- FreeSurfer
- FSL
- IMSIM
- MATLAB
- MRIcron
- MRtrix3
- NIAK
- Psychophysics Toolbox
- Psychopy
- Psychtoolbox 3.0.14
- Psychtoolbox v3.0.11
- Psychtoolbox3 (3.0.16)
- PsyScope
- SPM
- SPM12
Philips
Philips Healthcare
- Ingenia
  - 5.4.1_5.4.1.1
Philips R3.2.2 with patch
Philips Release 3.0.2
Powerpoint
Psychological Software Tools
- bidskit
- dcm2niix
- E-Prime 2.0
- E-PRime 3.0
- E-Scan
- PsychToolbox
- Superlab
PsychoPy
PsychoPy3
Psycopy
PyCap
QNX real-time operating system
Quicktime
REDCap
Siemens
- Magnetom 7T B17 Syngo
- Magnetom Prisma
- MAGNETOM Skyra
- Magnetom Syngo
- Magnetom Trio
  - Allegra
    - Syngo MR 2004A 4VA25A
    - Syngo MR A30 4VA30A
  - Tim System
    - Syngo MR B15
    - Syngo MR B17
    - Syngo MR B17A
    - Syngo MR B19
    - Syngo MR E11
- Magnetom Verio
- Syngo MR B17
- Syngo MR E11
- VB17/VE12U
- XA30
Siemens Vida 3T
SIGNA_LX1.MR30.1_RO1_2322.c
SR Research
- Experiment Builder
  - Version 1.10.1241
  - Version 1.10.1630
Statistical Discovery from SAS
- JMP Statistical Package
VE-11B Platform
VE11C

Equipment/Stimuli:

4-button button box
5-button button box
Applied Science Laboratories
- Eye Tracking System 5000
Arrington Research
- ViewPoint EyeTracker
Audio
- Avotec
  - Silent Scan
    - SS 3100
    - SS 3200
  - The Conformal Headset
- EyeLink
- Headphones
- MR Confon
  - Starter F
    - Optime 1
- NordicNeuroLab
  - Audio System
- Optoacoustic
  - Optoactive ANC headphone, FOMRI-III microphone
- Resonance technology Inc
  - SereneSound
- Sensimetrics
  - Model S14
  - Model S15
BioPac Systems
- AcqKnowledge
  - Version 4.2
- MP150
- MP160
Brain Resource
- iSPOT
Cambridge Research Systems
- BOLDscreen 24 LCD
- BOLDScreen 32 LCD
- fORP 904 Subject Response Package. Button Box -4L
- fORP 932 Subject Response Package. Button box -4L
Cedrus
- Lumina MRA Response Box
- Superlab 5.0
Cell Gen Therapeutics
- Laser Diode Model CG-5000 1064 nm
Cengage
- CogLab
Current Designs
- 2-Button Fiber Optic Response Pad
- 4 Button Bimanual
- 4-Button Inline Fiber Optic Response Pad HHSC-1X4-L
- 8 Button Bimanual Straight Lines
- 932 Interface and Power Supply
- Gamepad
- Grip force
- Mini USB Optical-to-TTL trigger converter
- PYKA Five Button Fiber Optic Response Pad
- Trackball 2
- USB 5 button box
Current Designs Finger Tapper Fiber Optic Response Pad
Dell Computer
- Dell Computer
Digitimer DS7A Electric Current Stimulator
Digitimer DS8R Electric Current Stimulator
Earplugs - AVOTEC Conformal Taper Ultra Soft Tips
Emotion Paradigm
Eprime 2.0
Eprime 3.0
eyes open - "Rest" displayed on BOLD screen
Fiber Bragg Grating Technology
- Micron Optics Si425 Interrogator
FIIO
- FiiO E10K USB DAC and Headphone Amplifier
GE Healthcare
- Head Coil 32 channel
- Head Coil 48 channel
- Head Coil 64 receiver channel
- Head Coil 8ch 23.5 cm
HybridMojo Trackpad
J-KEM Scientific
- Four Syringe Pump System
Javascript Nemo
Joystick
Magstim
- Magstim Rapid
Matlab
- CONN Toolbox
- In-house scripts
- Psychophysics Toolbox
- Psychtoolbox
Medoc
- ATS Thermode
- Thermal Sensory Analyzer (TSA2)
Micron Optics Si425 Interrogator with custom-built, fiber optic force device
NATA Technologies Fiberoptic Mouse
National Instruments
- LabView
neuroCare Group
- DC Stimulator MR
Neuroimaging Solutions
Nova Medical
- 1Tx 32Rx Head Coil
Open Source
- Cigal
- DMDX
- PsychoPy
- PsyScope
- Unity Game Engine
PDC Projection System
PET
Philips dStream 32-Channel Head Coil
Presentation
PsychLab by Contact Instruments
Psychology Software Tools
- 5 Button Right Celeritas Fiber Optic Response System
- Celeritas 3-Button Ergo Right Fiber Optic Response Unit
- Celeritas Fiber Optic Response System
- E-Prime
  - E-Studio file
  - version 2.0.10.x
- Hyperion MRI Digital Projection System PST-100984
- PsychoPy 2
- PsychoPy 3
- PsychoPy2
- Serial Response Box
- Task-based fMRI
PsychoPy (version 1.85.2)
Resting state - no external stimulus applied
Resting State Fixation Cross
Resting State fMRI (no stimuli)
Siemens
- Head Coil 12-Channel
- Head Coil 16-Channel
- Head Coil 32-Channel
- Head Coil 64-Channel
- MicrO2 Portable Pulse Oximeter
  - Model 07389567
- Respiratory Belt
  - Model 7391092
Siemens Head Coil 20-Channel
SR Research
- EyeLink 1000 Plus
- SR EyeLink 1000
Structural (no stimuli)
tDCS (Transcranial Direct Current Stimulation)
Unity
Video
- Dell Computer
  - 11th Generation Intel Core i7
- International Academy of Pelvic Surgery (IAPS) Video Library
- Mac Computer
  - MacBook
  - Macbook 2.18 GHz Intel core i7 Processor OS X9
  - MacBook Pro 1.4GHz quad-core Intel Core i5 Processor
  - MacBook Pro 2.0 GHz dual-core Intel Core i7 processor
  - Macbook Pro 2.3 GHz Intel Core i5
  - MacBook Pro 2.6 GHz Intel core i7 Processor
- Open Source or Academic
  - Psychopy
- Resonance Technology
  - MagnetVision 1920-47 3D system
  - VisuaStim Digital Goggles
- Video control system
  - Avotec
    - Real Eye Monocular eye tracking system
      - Model RE5701
    - Silent Vision™ Projectors
      - SV-6011
  - MRA
    - fMRI Stimulus Delivery System
- Video Projector
  - BenQ MH530FHD
  - Custom Projector
  - Digital Projection
    - Dell
      - 11th Generation Intel Core i5
      - Dell 1610HD DLP
      - Dell 1650
    - Epson
      - Powerlite 7250
      - PowerliteProG5550
    - Mercury 5000HD
  - MR-compatible monitor
  - NordicNeuroLab
    - In room ViewingDevice, 40” LCD monitor
    - VisualSystem HD
  - Panasonic
    - PT-DW750BU WXGA DLP Projector
  - VPixx PROPixx
- Video splitter
  - Avotec
    - Real Eye
  - Psychology Software Tools Inc
    - E-prime
    - Hyperion MRI Digital Projection System
  - Resonance Technology Inc
    - VisuaStimDigital

Block/Event Design

ID - 1

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

None

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

mprage.pdf

Event Name:

mprage

ID - 2

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

E-prime

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

dynfaces.pdf

Event Name:

dynamic_faces

ID - 3

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

E-prime

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

reward.pdf

Event Name:

reward

ID - 4

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

None

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

dti.pdf

Event Name:

dti

ID - 5

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

E-prime

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

efnback.pdf

Event Name:

efnback

ID - 6

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

None

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

resting_state.pdf

Event Name:

resting_state

ID - 7

Number of Trials:

EEG:

Trial Duration:

Eye Tracking:

Video Stimuli:

None

Video File:

Audio Stimuli:

None

Audio File:

Block Design File:

fieldmap.pdf

Event Name:

field_mapping

Postprocessing

Has Postprocessing?:

Yes

ROI:

Data Inclusion Notes:

Number of ROI:

Data File Specifications:

ROI File:

Acquisition Sequence:

Experiment: Help Information

Acquisition

The Acquisition parameters needed for an experiment include the following:

Name of the experiment is required. Please be concise and specific as possible.

Following experiment name, selection boxes are provided for the Equipment, Software, or other items specific to experiment type. At least one selection is required for each. If NDA does not have the appropriate listing, select Add New to add the information provided. Following the selection boxes, provide additional information may be required depending on experiment type. Any required items are denoted by an asterisk (*).

Block/Event Design

At least one block/event is required. Note that any fields denoted with an asterisk (*) are required. All data must be devoid of personally identifiable data, including the contents of any files attached to the experiment.

Note: To simplify definition of multiple events, we provide an Import from XML function. This function supports importing data from all three experiment sections (Acquisition, Block/Event Design, and Post Processing), at this time files cannot be uploaded from XML A test format is provided here and our XML Schema Definition (xsd) can be found here.

Post Processing

If you have completed any post processing on your data, please choose 'Yes' for Has Postprocessing? If not, select 'No'. Depending on this selection the remaining post processing fields will be enabled (some of which will be required). If you are initially providing raw, non-analyzed data you can select 'No', then return to the experiment to add post processing steps at a later date when the analyzed data are being provided.

Please provide information about post-processing manipulations, i.e. artifact detection algorithms, segmentation used for post data collection, items denoted with an asterisk (*) are required.

New Password:
Repeat New Password:

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Disclaimer

Acquisition

Block/Event Design

Post Processing