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Change History For

ChIP Sequencing

6 Shared Subjects

Metadata information about Chromatin immunoprecipitation with sequencing (ChIP-seq) experiment/project. ChIP-seq identifies genome-wide DNA binding sites for transcription factors and other proteins.
Omics
Omics
05/23/2022
chip_seq01
03/13/2024
View Data Structure
01
Definition
Submission Template
Element Name Change Description Before Now When
data_file1 NOTES, NOTES: NOTES: Path to data file, e.g., Users/username/Documents/subjectABC_file1.csv 06/23/2025 13:26 PM
src_subject_id ELEMENT_SIZE, ELEMENT_SIZE: 20 ELEMENT_SIZE: 45 05/13/2025 11:50 AM
libraryconstructionprotocol NOTES, NOTES: 1=SMART-seq; 2=SMART-seq2; 3=SMART-seq3; 4=SMART-seq4; 5=STRT-seq; 6=STRT-seq-C1; 7=STRT-seq-2i; 8=Quartz-seq; 9=Quartz-seq2; 10=CEL-seq; 11=CEL-seq2; 12=10x Chromium Single Cell 3' V3 FeatureBarcoding; 13=10x Chromium Single Cell 3' V2 and V3 GE; 14=10x Chromium Single Cell 3' V1 GE; 15=10x Chromium Single Cell 5' VDJ; 16=10x Chromium Single Cell 5' GE; 17=SureCell 3' WTA for ddSEQ; 18=MARS-seq / MARS-seq2.0; SCRB-seq / mcSCRB-seq; 18=Drop-seq / Seq-Well; 19=scifi-RNA-seq; 20=Microwell-seq; 21=BD Rhapsody; 22=sci-RNA-seq3; 23=sci-RNA-seq; 24=Seq-Well S3; 25=Tang 2009; 26=SPLiT-seq; 27=inDrop; 28=NEBNext; 29=NexteraXT; 30=Omni-ATAC; -99=Other NOTES: 1=SMART-seq; 2=SMART-seq2; 3=SMART-seq3; 4=SMART-seq4; 5=STRT-seq; 6=STRT-seq-C1; 7=STRT-seq-2i; 8=Quartz-seq; 9=Quartz-seq2; 10=CEL-seq; 11=CEL-seq2; 12=10x Chromium Single Cell 3' V3 FeatureBarcoding; 13=10x Chromium Single Cell 3' V2 and V3 GE; 14=10x Chromium Single Cell 3' V1 GE; 15=10x Chromium Single Cell 5' VDJ; 16=10x Chromium Single Cell 5' GE; 17=SureCell 3' WTA for ddSEQ; 18=MARS-seq / MARS-seq2.0; SCRB-seq / mcSCRB-seq; 18=Drop-seq / Seq-Well; 19=scifi-RNA-seq; 20=Microwell-seq; 21=BD Rhapsody; 22=sci-RNA-seq3; 23=sci-RNA-seq; 24=Seq-Well S3; 25=Tang 2009; 26=SPLiT-seq; 27=inDrop; 28=NEBNext; 29=NexteraXT; 30=Omni-ATAC; 31=10x Visium Gene Expression protocol; -99=Other 05/08/2024 13:30 PM
libraryconstructionprotocol VALUE_RANGE, VALUE_RANGE: 1::30; -99 VALUE_RANGE: 1::31; -99 05/08/2024 13:26 PM
interview_age VALUE_RANGE, VALUE_RANGE: 0 :: 1260 VALUE_RANGE: 0::1440 04/04/2024 13:54 PM
readstrandorigin VALUE_RANGE, VALUE_RANGE: 1; 2 VALUE_RANGE: 1::4; 999 03/25/2024 11:37 AM
readstrandorigin NOTES, NOTES: 1=Forward; 2=Reverse NOTES: 1=Forward; 2=Reverse; 3=Unstranded; 4=First-strand; 999=Missing 03/25/2024 11:37 AM
assay NEW_MAP_ELEMENT Added data element 'assay' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
celltype NEW_MAP_ELEMENT Added data element 'celltype' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
gen_rin NEW_MAP_ELEMENT Added data element 'gen_rin' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
library_prep_batch NEW_MAP_ELEMENT Added data element 'library_prep_batch' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
libraryversion NEW_MAP_ELEMENT Added data element 'libraryversion' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
mappedreads NEW_MAP_ELEMENT Added data element 'mappedreads' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
mediangenes NEW_MAP_ELEMENT Added data element 'mediangenes' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
medianumis NEW_MAP_ELEMENT Added data element 'medianumis' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
platform NEW_MAP_ELEMENT Added data element 'platform' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
readlength_max NEW_MAP_ELEMENT Added data element 'readlength_max' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
readlength_min NEW_MAP_ELEMENT Added data element 'readlength_min' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
sample_id_biorepository NEW_MAP_ELEMENT Added data element 'sample_id_biorepository' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
validbarcodereads NEW_MAP_ELEMENT Added data element 'validbarcodereads' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
vendor NEW_MAP_ELEMENT Added data element 'vendor' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
rnabatch NEW_MAP_ELEMENT Added data element 'rnabatch' to data structure 'chip_seq01'. 03/13/2024 14:29 PM
mappedreads NEW_DATA_ELEMENT 03/13/2024 14:29 PM
assay NEW_DATA_ELEMENT 03/13/2024 12:08 PM
readlength_min NEW_DATA_ELEMENT 03/13/2024 12:08 PM
readlength_max NEW_DATA_ELEMENT 03/13/2024 12:08 PM
data_file1 TYPE, ELEMENT_SIZE, TYPE: String ELEMENT_SIZE: 3000 TYPE: File ELEMENT_SIZE: 255 01/10/2023 10:25 AM
data_file1 ELEMENT_SIZE, ELEMENT_SIZE: 30000 ELEMENT_SIZE: 3000 01/05/2023 14:46 PM
data_file1 ELEMENT_SIZE, ELEMENT_SIZE: ELEMENT_SIZE: 30000 01/05/2023 14:46 PM
data_file1 TYPE TYPE: File TYPE: String 01/05/2023 14:40 PM
gender PERMANENTLY ALIASED gender sex 04/22/2019 00:00 AM
Data Structure Change History

This page displays a list of all the changes that have been made to this data structure since its original definition. You can view the element name, the attribute that was changed, previous and subsequent values, and the timestamp of the change. Use the search bar to filter the displayed changes.

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