Loading...

Subscribe to our mailing list

Mailing List(s)
Email Format

You are now leaving the NIMH Data Archive (NDA) web site to go to:

Click on the address above if the page does not change within 10 seconds.

Disclaimer

NDA is not responsible for the content of this external site and does not monitor other web sites for accuracy.

This repository is under review for potential modification in compliance with Administration directives.

1 Numbers reported are subjects by age
New Trial
New Project

Format should be in the following format: Activity Code, Institute Abbreviation, and Serial Number. Grant Type, Support Year, and Suffix should be excluded. For example, grant 1R01MH123456-01A1 should be entered R01MH123456

Please select an experiment type below

To add an existing Data Structure, enter its title in the search bar. If you need to request changes, select the indicator "No, it requires changes to meet research needs" after selecting the Structure, and upload the file with the request changes specific to the selected Data Structure. Your file should follow the Request Changes Procedure. If the Data Structure does not exist, select "Request New Data Structure" and upload the appropriate zip file.

You have requested to move the sharing dates for the following assessments:
Data Expected Item Original Sharing Date New Sharing Date

Please provide a reason for this change, which will be sent to the Program Officers listed within this collection:

Explanation must be between 20 and 200 characters in length.

Please press Save or Cancel
Collection Summary Collection Charts
Collection Title Collection Investigators Collection Description
Pediatric MRI
PEDIATRIC STUDY CENTERS: Michael J. Rivkin, M.D., Boston Children's Hospital; William S. Ball, M.D., Children's Hospital Medical Center of Cincinnati; Dah-Jyuu Wang, Ph.D., Children's Hospital of Philadelphia; James T. McCracken, M.D., University of California at Los Angeles; Michael Brandt, Ph.D. and Jack Fletcher, Ph.D., University of Texas Health Science Center; Robert McKinstry, M.D., Washington University. DATA COORDINATING CENTER: Alan Evans, Ph.D., Montreal Neurological Institute Center. CLINICAL COORDINATING CENTER: Kelly Botteron, M.D., Washington University. DIFFUSION TENSOR PROCESSING CENTER: Carlo Pierpaoli, M.D., National Institute of Child Health and Human Development. SPECTROSCOPY PROCESSING CENTER: Joseph O'Neill, Ph.D., University of California at Los Angeles. 
Pediatric MRI Release 5.0. Visit our website at http://pediatricmri.nih.gov for more information about this project.
NIMH Data Archive
06/15/2010
Funding Completed
Close Out
No
556
Imaging+2OmicsN/AClinical1553
setssize
22
3-1
11
1,2553
2,3-1
1,3-1
1,2,3-1
NIH - Contract None

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0018712 Publication Hanson JL, Chandra A, Wolfe BL, Pollak SD (2011) Association between Income and the Hippocampus. PLoS ONE 6(5): e18712. doi:10.1371/journal.pone.0018712 Qualified Researchers
Objective1_procedure_manual.pdf Objectives Procedure manual for Objective 1 subjects (ages 4.5+ years). Version public release 1.0, January 2007. Qualified Researchers
Objective2_procedure_manual.pdf Objectives Procedure manual for Objective 2 subjects (ages 0-4.5 years). Final version. Qualified Researchers
MRI_protocol_manual.pdf Analysis Protocol MRI procedure manual distributed to each participating site in the study. Covers acquisition and transfer of MRI data only. November 2006 version. Qualified Researchers
Release3_notes.pdf Other Release 3 notes. October 2009. Qualified Researchers
Release4_notes.pdf Publication Release 4 notes. June 2010. Qualified Researchers
Neuroimaging_white_paper.pdf Methods Neuroimaging white paper. Qualified Researchers
Clinical_behavioral_white_paper.pdf Methods Clinical/behavior white paper. Qualified Researchers
Spectroscopy_white_paper.pdf Methods Spectroscopy white paper. Qualified Researchers
Release3_notes.pdf Other Release 3 notes. October 2009. Qualified Researchers
Release4_notes.pdf Other Release 4 notes. June 2010. Qualified Researchers
www.tortoisedti.org Software New free DTI software. Qualified Researchers
Objective1_Procedure_Manual.pdf Objectives Procedure manual for Objective 1 subjects (ages 4.5+ years). Qualified Researchers
Objective2_Procedure_Manual.pdf Objectives Procedure manual for Objective 2 subjects (ages 0-4.5 years). Qualified Researchers
Study_Protocol.pdf Methods Study protocol. Qualified Researchers
MRI_Procedure_Manual.pdf Methods MRI procedure manual. Qualified Researchers
Clinical_Behavioral_White_Paper.pdf Methods Clinical/behavioral white paper. Qualified Researchers
Database_White_Paper.pdf Methods Database white paper. Qualified Researchers
Neuroimaging_White_Paper.pdf Methods Structural MRI white paper. Qualified Researchers
Spectroscopy_White_Paper.pdf Methods Spectroscopy white paper. Qualified Researchers
Release3_Notes.pdf Other Release 3 notes. October 2009. Qualified Researchers
Release4_Notes.pdf Other Release 4 notes. June 2010. Qualified Researchers
www.tortoisedti.org Software DTI analysis software developed by the project. Qualified Researchers
Growth_maps.zip Other Group-averaged surface growth maps for Objective 2 data that passed QC for surface extraction. Qualified Researchers
eDTI_White_Paper_R5.1.pdf Methods Expanded diffusion tensor imaging (eDTI) white paper. Qualified Researchers
DTI_White_Paper_R5.1.pdf Methods Diffusion tensor imaging (DTI) white paper. Qualified Researchers
Release5.1_Notes.pdf Other Release 5.1 notes (July 9, 2012). Qualified Researchers
Study_Protocol.pdf Methods Study protocol Qualified Researchers
Release5_Notes.pdf Other Release 5 notes (April 5, 2012). Qualified Researchers
Anatomic_MRI_White_Paper_R5.pdf Methods Anatomic MRI white paper and project overview. Qualified Researchers
Clinical_Behavioral_White_Paper_R5.pdf Methods Clinical/behavioral white paper. Qualified Researchers
DTI_White_Paper_R5.pdf Methods Diffusion tensor imaging (DTI) white paper. Qualified Researchers
Spectroscopy_White_Paper_R5.pdf Methods Spectroscopy white paper. Qualified Researchers
Pediatric_MRI_Data_Dictionary_R5.xls Other Release 5 data dictionary. Qualified Researchers
Release5.1_Notes_revised_061213.pdf Other Release 5.1 Notes Qualified Researchers
nihpd_sym_all_nifti.zip Other NIHPD Objective 1 L-R symmetric atlases General Public
nihpd_obj2_asym_nifti.zip Other NIHPD Objective 2 atlases General Public
nihpd_asym_all_nifti.zip Other NIHPD Objective 1 asymmetric atlases General Public



Edit
helpcenter.filter-cart

NDA Help Center

Filter Cart

Viewable at the top right of NDA pages, the Filter Cart is a temporary holder for filters and data they select. Filters are added to the Workspace first, before being submitted to The Filter Cart. Data selected by filters in the Filter Cart can be added to a Data Package or an NDA Study from the Data Packaging Page, by clicking the 'Create Data Package / Add Data to Study' button.

The filter cart supports combining multiple filters together, and depending on filter type will use "AND" or "OR" when combining filters.

Multiple selections from the same filter type will result in those selections being applied with an ‘OR’ condition. For example, if you add an NDA Collection Filter with selections for both collections 2112 and 2563 to an empty Workspace, the subjects from NDA Collection 2112 ‘OR’ NDA Collection 2563 will be added to your Workspace even if a subject is in both NDA Collections. You can then add other NDA Collections to your Workspace which further extends the ‘OR’ condition.

If a different filter type is added to your Workspace, or a filter has already been submitted to the Filter Cart, the operation then performs a logical ‘AND’ operation. This means that given the subjects returned from the first filter, only those subjects that matched the first filter are returned by the second filter (i.e., subjects that satisfied both filters).

When combining other filters with the GUID filter, please note the GUID filter should be added last. Otherwise, preselected data may be lost. For example, a predefined filter from Featured Datasets may select a subset of data available for a subject. When combined with a GUID filter for the same subject, the filter cart will contain all data available from that subject, data structure, and dataset; this may be more data than was selected in the predefined filter for that subject. Again, you should add the GUID Filter as the last filter to your cart. This ensures 'AND' logic between filters and will limit results to the subjects, data structures, and datasets already included in your filter cart.

Note that only the subjects specific to your filter will be added to your Filter Cart and only on data shared with the research community. Other data for those same subjects may exist (i.e., within another NDA Collection, associated with a data structure that was not requested in the query, etc.). So, users should select ‘Find all Subjects Data’ to identify all data for those specific subjects.

Additional Tips:

  • You may query the data without an account, but to gain access you will need to create an NDA user account and apply for access. Most data access requires that you or your lab are sponsored by an NIH recognized institution with Federal Wide Assurance (FWA). Without access, you will not be able to obtain individual-level data.

Once you have selected data of interest you can:

  • Create a data package - This allows you to specify format for access/download
  • Assign to Study Cohort - Associate the data to an NDA Study allowing for a DOI to be generated and the data to be linked directly to a finding, publication, or data release.
  • Find All Subject Data - Depending on filter types being used, not all data associated with a subject will be selected. Data may be restricted by data structure, NDA Collection, or outcome variables (e.g., NDA Study). ‘Find All Data’ expands the filter criteria by replacing all filters in your Filter Cart with a single Query by GUID filter for all subjects selected by those filters.

Please Note:

  • When running a query, it may take a moment to populate the Filter Cart. Queries happen in the background so you can define other queries during this time.
  • When you add your first filter, all data associated with your query will be added to the Filter Cart (e.g., a Concept, an NDA Collection, a Data Structure/Element, etc.). As you add additional filters, they will also display in the Filter Cart. Only the name of filter will be shown in the Filter Cart, not the underlying structures.
  • Information about the contents of the Filter Cart can be seen by clicking "Edit”.
  • Once your results appear in the Filter Cart, you can create a data package or assign subjects to a study by selecting the 'Package/Assign to Study' option. You can also 'Edit' or 'Clear' filters.

Frequently Asked Questions

  • What is a Filter Cart?
  • What do I do after filters are added to the Filter Cart?
  • Are there limitations on the amount of data a user can download?
  • How does Filter Cart Boolean logic work?

Glossary

  • Workspace
  • Filter Cart
helpcenter.collection.general-tab

NDA Help Center

Collection - General Tab

Fields available for edit on the top portion of the page include:

  • Collection Title
  • Investigators
  • Collection Description
  • Collection Phase
  • Funding Source
  • Clinical Trials

Collection Phase: The current status of a research project submitting data to an NDA Collection, based on the timing of the award and/or the data that have been submitted.

  • Pre-Enrollment: The default entry made when the NDA Collection is created.
  • Enrolling: Data have been submitted to the NDA Collection or the NDA Data Expected initial submission date has been reached for at least one data structure category in the NDA Collection.
  • Data Analysis: Subject level data collection for the research project is completed and has been submitted to the NDA Collection. The NDA Collection owner or the NDA Help Desk may set this phase when they’ve confirmed data submission is complete and submitted subject counts match at least 90% of the target enrollment numbers in the NDA Data Expected. Data submission reminders will be turned off for the NDA Collection.
  • Funding Completed: The NIH grant award (or awards) associated with the NDA Collection has reached its end date. NDA Collections in Funding Completed phase are assigned a subphase to indicate the status of data submission.
    • The Data Expected Subphase indicates that NDA expects more data will be submitted
    • The Closeout Subphase indicates the data submission is complete.
    • The Sharing Not Met Subphase indicates that data submission was not completed as expected.

Blinded Clinical Trial Status:

  • This status is set by a Collection Owner and indicates the research project is a double blinded clinical trial. When selected, the public view of Data Expected will show the Data Expected items and the Submission Dates, but the targeted enrollment and subjects submitted counts will not be displayed.
  • Targeted enrollment and subjects submitted counts are visible only to NDA Administrators and to the NDA Collection or as the NDA Collection Owner.
  • When an NDA Collection that is flagged Blinded Clinical Trial reaches the maximum data sharing date for that Data Repository (see https://nda.nih.gov/nda/sharing-regimen.html), the embargo on Data Expected information is released.

Funding Source

The organization(s) responsible for providing the funding is listed here.

Supporting Documentation

Users with Submission privileges, as well as Collection Owners, Program Officers, and those with Administrator privileges, may upload and attach supporting documentation. By default, supporting documentation is shared to the general public, however, the option is also available to limit this information to qualified researchers only.

Grant Information

Identifiable details are displayed about the Project of which the Collection was derived from. You may click in the Project Number to view a full report of the Project captured by the NIH.

Clinical Trials

Any data that is collected to support or further the research of clinical studies will be available here. Collection Owners and those with Administrator privileges may add new clinical trials.

Frequently Asked Questions

  • How does the NIMH Data Archive (NDA) determine which Permission Group data are submitted into?
  • How do I know when a NDA Collection has been created?
  • Is a single grant number ever associated with more than one Collection?
  • Why is there sometimes more than one grant included in a Collection?

Glossary

  • Administrator Privilege
  • Collection Owner
  • Collection Phase
  • Collection Title
  • Grant
  • Supporting Documentation
  • NIH Research Initiative
  • Permission Group
  • Planned Enrollment
  • Actual Enrollment
  • NDA Collection
  • Data Use Limitations
  • Total Subjects Shared
helpcenter.collection.experiments-tab

NDA Help Center

Collection - Experiments

The number of Experiments included is displayed in parentheses next to the tab name. You may download all experiments associated with the Collection via the Download button. You may view individual experiments by clicking the Experiment Name and add them to the Filter Cart via the Add to Cart button.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may create or edit an Experiment.

Please note: The creation of an NDA Experiment does not necessarily mean that data collected, according to the defined Experiment, has been submitted or shared.

Frequently Asked Questions

  • Can an Experiment be associated with more than one Collection?

Glossary

  • Experiment Status
  • Experiment ID
helpcenter.collection.shared-data-tab

NDA Help Center

Collection - Shared Data

This tab provides a quick overview of the Data Structure title, Data Type, and Number of Subjects that are currently Shared for the Collection. The information presented in this tab is automatically generated by NDA and cannot be edited. If no information is visible on this tab, this would indicate the Collection does not have shared data or the data is private.

The shared data is available to other researchers who have permission to access data in the Collection's designated Permission Group(s). Use the Download button to get all shared data from the Collection to the Filter Cart.

Frequently Asked Questions

  • How will I know if another researcher uses data that I shared through the NIMH Data Archive (NDA)?
  • Can I get a supplement to share data from a completed research project?
  • Can I get a supplement to share data from a research project that is still ongoing?

Glossary

  • Data Structure
  • Data Type
  • Shared
helpcenter.collection.publications-tab

NDA Help Center

Collection - Publications

The number of Publications is displayed in parentheses next to the tab name. Clicking on any of the Publication Titles will open the Publication in a new internet browsing tab.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may mark a publication as either Relevant or Not Relevant in the Status column.

Frequently Asked Questions

  • How can I determine if a publication is relevant?
  • Where does the NDA get the publications?

Glossary

  • Create Study
  • Not Determined Publication
  • Not Relevant Publication
  • PubMed
  • PubMed ID
  • Relevant Publication
helpcenter.collection.associated-studies-tab

NDA Help Center

Collection - Associated Studies

Clicking on the Study Title will open the study details in a new internet browser tab. The Abstract is available for viewing, providing the background explanation of the study, as provided by the Collection Owner.

Primary v. Secondary Analysis: The Data Usage column will have one of these two choices. An associated study that is listed as being used for Primary Analysis indicates at least some and potentially all of the data used was originally collected by the creator of the NDA Study. Secondary Analysis indicates the Study owner was not involved in the collection of data, and may be used as supporting data.

Private v. Shared State: Studies that remain private indicate the associated study is only available to users who are able to access the collection. A shared study is accessible to the general public.

Frequently Asked Questions

  • How do I associate a study to my collection?

Glossary

  • Associated Studies Tab