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To associate an experiment to the current collection, just select an axperiment from the table below then click the associate experiment button to persist your changes (saving the collection is not required). Note that once an experiment has been associated to two or more collections, the experiment will not longer be editable.

The table search feature is case insensitive and targets the experiment id, experiment name and experiment type columns. The experiment id is searched only when the search term entered is a number, and filtered using a startsWith comparison. When the search term is not numeric the experiment name is used to filter the results.

Select	Experiment Id	Experiment Name	Experiment Type	Created On

24	HI-NGS_R1	Omics	02/16/2011
475	MB1-10 (CHOP)	Omics	06/07/2016
490	Illumina Infinium PsychArray BeadChip Assay	Omics	07/07/2016
501	PharmacoBOLD Resting State	fMRI	07/27/2016
506	PVPREF	Omics	08/05/2016
509	ABC-CT Resting v2	EEG	08/18/2016
13	Comparison of FI expression in Autistic and Neurotypical Homo Sapiens	Omics	12/28/2010
18	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	01/06/2011
22	Stitching PCR Sequencing	Omics	02/14/2011
26	ASD_Methylation	Omics	03/01/2011
29	Microarray family 03 (father, mother, sibling)	Omics	03/24/2011
37	Standard paired-end sequencing of BCRs	Omics	04/19/2011
38	Illumina Mate-Pair BCR sequencing	Omics	04/19/2011
39	Custom Jumping Libraries	Omics	04/19/2011
40	Custom CapBP	Omics	04/19/2011
41	Immunofluorescence	Omics	05/11/2011
43	Autism brain sample genotyping, Illumina	Omics	05/16/2011
47	ARRA Autism Sequencing Collaboration at Baylor. SOLiD 4 System	Omics	08/01/2011
53	AGRE Omni1-quad	Omics	10/11/2011
59	AGP genotyping	Omics	04/03/2012
60	Ultradeep 454 sequencing of synaptic genes from postmortem cerebella of individuals with ASD and neurotypical controls	Omics	06/23/2012
63	Microemulsion PCR and Targeted Resequencing for Variant Detection in ASD	Omics	07/20/2012
76	Whole Genome Sequencing in Autism Families	Omics	01/03/2013
519	Resting	fMRI	11/08/2016
90	Genotyped IAN Samples	Omics	07/09/2013
91	NJLAGS Axiom Genotyping Array	Omics	07/16/2013
93	AGP genotyping (CNV)	Omics	09/06/2013
106	Longitudinal Sleep Study. H20 200. Channel set 2	EEG	11/07/2013
107	Longitudinal Sleep Study. H20 200. Channel set 3	EEG	11/07/2013
108	Longitudinal Sleep Study. AURA 200	EEG	11/07/2013
105	Longitudinal Sleep Study. H20 200. Channel set 1	EEG	11/07/2013
109	Longitudinal Sleep Study. AURA 400	EEG	11/07/2013
116	Gene Expression Analysis WG-6	Omics	01/07/2014
131	Jeste Lab UCLA ACEii: Charlie Brown and Sesame Street - Project 1	Eye Tracking	02/27/2014
132	Jeste Lab UCLA ACEii: Animacy - Project 1	Eye Tracking	02/27/2014
133	Jeste Lab UCLA ACEii: Mom Stranger - Project 2	Eye Tracking	02/27/2014
134	Jeste Lab UCLA ACEii: Face Emotion - Project 3	Eye Tracking	02/27/2014
145	AGRE/FMR1_Illumina.JHU	Omics	04/14/2014
146	AGRE/MECP2_Sanger.JHU	Omics	04/14/2014
147	AGRE/MECP2_Junior.JHU	Omics	04/14/2014
151	Candidate Gene Identification in familial Autism	Omics	06/09/2014
152	NJLAGS Whole Genome Sequencing	Omics	07/01/2014
154	Math Autism Study - Vinod Menon	fMRI	07/15/2014
155	Resting	fMRI	07/25/2014
156	Speech	fMRI	07/25/2014
159	Emotion	fMRI	07/25/2014
160	syllable contrast	EEG	07/29/2014
167	School-age naturalistic stimuli	Eye Tracking	09/19/2014
44	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	06/27/2011
45	Exome Sequencing of 20 Sporadic Cases of Autism Spectrum Disorder	Omics	07/15/2011

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Reliability of Repetitive TMS-induced Modulation of Cortical Excitability #2944

General
Experiments (4)
Shared Data
Publications (49)
Data Expected (4)
Associated Studies (0)

Collection Title	Collection Investigators	Collection Description
Collection Title:	Reliability of Repetitive TMS-induced Modulation of Cortical Excitability
Collection Investigators:	Moushin Shafi
Collection Description:	Repetitive Transcranial Magnetic Stimulation (rTMS) is a noninvasive brain stimulation technique capable of modulating activity in the targeted brain region and its connected brain circuits beyond the duration of the stimulation itself. rTMS is utilized in neuroscience research to investigate brain function during human cognition and behavior, and to understand brain pathophysiology in neuropsychiatric diseases. Clinically, rTMS protocols have diagnostic and therapeutic utility across a wide spectrum of disease states, and four rTMS devices are cleared by the Food and Drug Administration (FDA) for treatment of medication-resistant depression. However, the variability of the neuromodulatory effects of rTMS and its sources are ill-defined. This knowledge gap represents a fundamental limitation for both, the interpretation of rTMS results and the design of studies. For example, it is challenging to calculate or assess the sample size for a study, and one cannot optimize rTMS parameters for an individual without knowing whether individual differences in rTMS response are reproducible. In addition, one cannot assume that rTMS protocols tested in motor cortex will produce similar neuromodulatory effects when administered to other brain regions. In this proposal we will use MRI-guided rTMS in combination with EMG, EEG and behavioral measures to characterize the variability of rTMS effects in primary motor cortex (M1) and in dorsolateral prefrontal cortex (DLPFC). In a cohort of 60 subjects, we will evaluate the inter-subject and intra-subject test-retest reliability of the modulatory effects of the most widely used rTMS protocols applied to M1. We will compare the impact of different rTMS protocols on corticospinal excitability (measured via motor-evoked potentials), cortical excitability (measured via simultaneous TMS-EEG), and motor performance (using a sequential finger tapping task). Each subject will undergo a total of 10 TMS-EMG-EEG-behavior sessions, evaluating repeated sessions of excitatory and inhibitory protocols. In a separate cohort of 60 subjects, we will evaluate the transfer of rTMS effects across brain regions by applying 10 Hz rTMS and iTBS to both M1 and DLPFC. Each subject will undergo a total of 10 TMS-EEG-behavior sessions contrasting stimulation protocols across regions (M1 versus DLPFC). All subjects will undergo extensive baseline assessment, including detailed exam, neuropsychological measures, structural and resting-state functional-connectivity MRI, computational modeling, laboratory and genetic testing, and EEG to identify predictors of inter-subject variability in response to rTMS. All data will be placed in a secure repository and made publicly accessible to other investigators. This study will define the reproducibility of the neuromodulatory effects of rTMS, quantifying the intrinsic variability of the method within and across individuals, across levels of analysis (neurophysiologic and behavioral) and brain regions (M1 versus DLPFC). These results will serve as a foundation to guide the planning, development and interpretation of all future studies utilizing rTMS to modulate brain function.
Data Repository:	NIMH Data Archive
Permission Group:
Collection Creation Date:	06/07/2018
Collection Phase:	Funding Completed
Collection Sub-Phase:	Close Out
Blinded Clinical Trial:	No
Total Funded Amount:	$984,484.00
Subjects Shared:	83

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Funding Sources:

Funding Source Name	Funding Source URL
NIH - Extramural	None

Supporting Documentation:

Grant Information:

Project Number	Project Title	Start Date	End Date	Planned Enrollment	Actual Enrollment	Organization	Funds Obligated
R01MH115949-01	Reliability of Repetitive TMS-induced Modulation of Cortical Excitability	06/01/2018	02/28/2023	300	134	BETH ISRAEL DEACONESS MEDICAL CENTER	$984,484.00

Clinical Trials:

helpcenter.collection.general-tab

Collection - General Tab

Fields available for edit on the top portion of the page include:

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Clinical Trials

Collection Phase: The current status of a research project submitting data to an NDA Collection, based on the timing of the award and/or the data that have been submitted.

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Funding Completed: The NIH grant award (or awards) associated with the NDA Collection has reached its end date. NDA Collections in Funding Completed phase are assigned a subphase to indicate the status of data submission.
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How does the NIMH Data Archive (NDA) determine which Permission Group data are submitted into?

During Collection creation, NDA staff determine the appropriate Permission Group based on the type of data to be submitted, the type of access that will be available to data access users, and the information provided by the Program Officer during grant award.
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When a Collection is created by NDA staff, an email notification will automatically be sent to the PI(s) of the grant(s) associated with the Collection to notify them.
Is a single grant number ever associated with more than one Collection?

The NDA system does not allow for a single grant to be associated with more than one Collection; therefore, a single grant will not be listed in the Grant Information section of a Collection for more than one Collection.
Why is there sometimes more than one grant included in a Collection?

In general, each Collection is associated with only one grant; however, multiple grants may be associated if the grant has multiple competing segments for the same grant number or if multiple different grants are all working on the same project and it makes sense to hold the data in one Collection (e.g., Cooperative Agreements).

Glossary

Administrator Privilege

A privilege provided to a user associated with an NDA Collection or NDA Study whereby that user can perform a full range of actions including providing privileges to other users.
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Generally, the Collection Owner is the contact PI listed on a grant. Only one NDA user is listed as the Collection owner. Most automated emails are primarily sent to the Collection Owner.
Collection Phase
The Collection Phase provides information on data submission as opposed to grant/project completion so while the Collection phase and grant/project phase may be closely related they are often different. Collection users with Administrative Privileges are encouraged to edit the Collection Phase. The Program Officer as listed in eRA (for NIH funded grants) may also edit this field. Changes must be saved by clicking the Save button at the bottom of the page. This field is sortable alphabetically in ascending or descending order. Collection Phase options include:
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A virtual container and organization structure for data and associated documentation from one grant or one large project/consortium. It contains tools for tracking data submission and allows investigators to define a wide array of other elements that provide context for the data, including all general information regarding the data and source project, experimental parameters used to collect any event-based data contained in the Collection, methods, and other supporting documentation. They also allow investigators to link underlying data to an NDA Study, defining populations and subpopulations specific to research aims.
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ID	Name	Created Date	Status	Type
1308	TRT_MRI	07/11/2019	Approved	fMRI
1313	TRT_EEG	07/12/2019	Approved	EEG
1482	TRT_EMG	01/14/2020	Approved	EEG
1488	TRT_ETT_Task_EEG	01/15/2020	Approved	EEG

helpcenter.collection.experiments-tab

Collection - Experiments

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Can an Experiment be associated with more than one Collection?
Yes -see the “Copy” button in the bottom left when viewing an experiment. There are two actions that can be performed via this button:
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Glossary

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Experiment ID

The ID number automatically generated by NDA which must be included in the appropriate file when uploading data to link the Experiment Definition to the subject record.

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Shared Data:

Title	Type	Number of Subjects
EEG Subject Files	Imaging	44
Genomics Subject	Genomics	71
Image	Imaging	52
Research Subject	Clinical Assessments	76

helpcenter.collection.shared-data-tab

Collection - Shared Data

This tab provides a quick overview of the Data Structure title, Data Type, and Number of Subjects that are currently Shared for the Collection. The information presented in this tab is automatically generated by NDA and cannot be edited. If no information is visible on this tab, this would indicate the Collection does not have shared data or the data is private.

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How will I know if another researcher uses data that I shared through the NIMH Data Archive (NDA)?

To see what data your project have submitted are being used by a study, simply go the Associated Studies tab of your collection. Alternatively, you may review an NDA Study Attribution Report available on the General tab.
Can I get a supplement to share data from a completed research project?

Often it becomes more difficult to organize and format data electronically after the project has been completed and the information needed to create a GUID may not be available; however, you may still contact a program staff member at the appropriate funding institution for more information.
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Unlike completed projects where researchers may not have the information needed to create a GUID and/or where the effort needed to organize and format data becomes prohibitive, ongoing projects have more of an opportunity to overcome these challenges. Please contact a program staff member at the appropriate funding institution for more information.

Glossary

Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
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A grouping of data by similar characteristics such as Clinical Assessments, Omics, or Neurosignal data.
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The term 'Shared' generally means available to others; however, there are some slightly different meanings based on what is Shared. A Shared NDA Study is viewable and searchable publicly regardless of the user's role or whether the user has an NDA account. A Shared NDA Study does not necessarily mean that data used in the NDA Study have been shared as this is independently determined. Data are shared according the schedule defined in a Collection's Data Expected Tab and/or in accordance with data sharing expectations in the NDA Data Sharing Terms and Conditions. Additionally, Supporting Documentation uploaded to a Collection may be shared independent of whether data are shared.

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Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Publications

Publications relevant to NDA data are listed below. Most displayed publications have been associated with the grant within Pubmed. Use the "+ New Publication" button to add new publications. Publications relevant/not relevant to data expected are categorized. Relevant publications are then linked to the underlying data by selecting the Create Study link. Study provides the ability to define cohorts, assign subjects, define outcome measures and lists the study type, data analysis and results. Analyzed data and results are expected in this way.

PubMed ID	Study	Title	Journal	Authors	Date	Status
39394714	Create Study	Prediction of stroke severity: systematic evaluation of lesion representations.	Annals of clinical and translational neurology	Bonkhoff, Anna K; Cohen, Alexander L; Drew, William; Ferguson, Michael A; Hussain, Aaliya; Lin, Christopher; Schaper, Frederic L W V J; Bourached, Anthony; Giese, Anne-Katrin; Oliveira, Lara C; Regenhardt, Robert W; Schirmer, Markus D; Jern, Christina; Lindgren, Arne G; Maguire, Jane; Wu, Ona; Zafar, Sahar; Rhee, John Y; Kimchi, Eyal Y; Corbetta, Maurizio; Rost, Natalia S; Fox, Michael D; MRI‐GENIE and GISCOME Investigators and the International Stroke Genetics Consortium	October 11, 2024	Not Determined
39185530	Create Study	Prediction of Postoperative Delirium in Older Adults from Preoperative Cognition and Occipital Alpha Power from Resting-State Electroencephalogram.	medRxiv : the preprint server for health sciences	Ning, Matthew; Rodionov, Andrei; Ross, Jessica M; Ozdemir, Recep A; Burch, Maja; Lian, Shu Jing; Alsop, David; Cavallari, Michele; Dickerson, Bradford C; Fong, Tamara G; Jones, Richard N; Libermann, Towia A; Marcantonio, Edward R; Santarnecchi, Emiliano; Schmitt, Eva M; Touroutoglou, Alexandra; Travison, Thomas G; Acker, Leah; Reese, Melody; Sun, Haoqi; Westover, Brandon; Berger, Miles; Pascual-Leone, Alvaro; Inouye, Sharon K; Shafi, Mouhsin M; SAGES II Study Group and the INTUIT/PRIME Study Groups	November 1, 2024	Not Determined
38562753	Create Study	A potential neuromodulation target for PTSD in Veterans derived from focal brain lesions.	Research square	Siddiqi, Shan; Philip, Noah S; Palm, Stephan; Arulpragasam, Amanda; Barredo, Jennifer; Bouchard, Heather; Ferguson, Michael; Grafman, Jordan; Morey, Rajendra; Fox, Michael; Carreon, David	March 19, 2024	Not Determined
38018143	Create Study	Converging Evidence for Frontopolar Cortex as a Target for Neuromodulation in Addiction Treatment.	The American journal of psychiatry	Soleimani, Ghazaleh; Joutsa, Juho; Moussawi, Khaled; Siddiqi, Shan H; Kuplicki, Rayus; Bikson, Marom; Paulus, Martin P; Fox, Michael D; Hanlon, Colleen A; Ekhtiari, Hamed	February 1, 2024	Not Determined
37919322	Create Study	Reliability of resting-state EEG modulation by continuous and intermittent theta burst stimulation of the primary motor cortex: a sham-controlled study.	Scientific reports	Rodionov, Andrei; Ozdemir, Recep A; Benwell, Christopher S Y; Fried, Peter J; Boucher, Pierre; Momi, Davide; Ross, Jessica M; Santarnecchi, Emiliano; Pascual-Leone, Alvaro; Shafi, Mouhsin M	November 2, 2023	Not Determined
37576473	Create Study	Greater cognitive reserve is related to lower cortical excitability in healthy cognitive aging, but not in early clinical Alzheimer''s disease.	Frontiers in human neuroscience	Buss, Stephanie S; Fried, Peter J; Macone, Joanna; Zeng, Victor; Zingg, Emma; Santarnecchi, Emiliano; Pascual-Leone, Alvaro; Bartrés-Faz, David	January 1, 2023	Not Determined
37532802	Create Study	Multiple sclerosis lesions that impair memory map to a connected memory circuit.	Journal of neurology	Kletenik, Isaiah; Cohen, Alexander L; Glanz, Bonnie I; Ferguson, Michael A; Tauhid, Shahamat; Li, Jing; Drew, William; Polgar-Turcsanyi, Mariann; Palotai, Miklos; Siddiqi, Shan H; Marshall, Gad A; Chitnis, Tanuja; Guttmann, Charles R G; Bakshi, Rohit; Fox, Michael D	November 1, 2023	Not Determined
37459658	Create Study	Spectral power ratio as a measure of EEG changes in mild cognitive impairment due to Alzheimer''s disease: a case-control study.	Neurobiology of aging	Flores-Sandoval, Aimee A; Davila-Pérez, Paula; Buss, Stephanie S; Donohoe, Kevin; O'Connor, Margaret; Shafi, Mouhsin M; Pascual-Leone, Alvaro; Benwell, Christopher S Y; Fried, Peter J	October 1, 2023	Not Determined
37398162	Create Study	Resting-state EEG signatures of Alzheimer''s disease are driven by periodic but not aperiodic changes.	bioRxiv : the preprint server for biology	Kopčanová, Martina; Tait, Luke; Donoghue, Thomas; Stothart, George; Smith, Laura; Sandoval, Aimee Arely Flores; Davila-Perez, Paula; Buss, Stephanie; Shafi, Mouhsin M; Pascual-Leone, Alvaro; Fried, Peter J; Benwell, Christopher S Y	June 12, 2023	Not Determined
37352290	Create Study	Neuromodulatory effects and reproducibility of the most widely used repetitive transcranial magnetic stimulation protocols.	PloS one	Magnuson, Justine; Ozdemir, Mehmet A; Mathieson, Elon; Kirkman, Sofia; Passera, Brice; Rampersad, Sumientra; Dufour, Alyssa B; Brooks, Dana; Pascual-Leone, Alvaro; Fried, Peter J; Shafi, Mouhsin M; Ozdemir, Recep A	January 1, 2023	Not Determined
37289520	Create Study	Network Localization of Awareness in Visual and Motor Anosognosia.	Annals of neurology	Kletenik, Isaiah; Gaudet, Kyla; Prasad, Sashank; Cohen, Alexander L; Fox, Michael D	September 1, 2023	Not Determined
37215043	Create Study	Reliability of resting-state EEG modulation by continuous and intermittent theta burst stimulation of the primary motor cortex: A sham-controlled study.	bioRxiv : the preprint server for biology	Rodionov, Andrei; Ozdemir, Recep A; Benwell, Christopher S Y; Fried, Peter J; Boucher, Pierre; Momi, Davide; Ross, Jessica M; Santarnecchi, Emiliano; Pascual-Leone, Alvaro; Shafi, Mouhsin M	May 12, 2023	Not Determined
36895052	Create Study	Reply to "Is There an Association between Tuber Involvement of the Fusiform Face Area in Autism Diagnosis?".	Annals of neurology	Cohen, Alexander L; Kroeck, Mallory R; Fox, Michael D; TACERN Study Group	June 1, 2023	Not Determined
36796601	Create Study	A Lesion-Derived Brain Network for Emotion Regulation.	Biological psychiatry	Jiang, Jing; Ferguson, Michael A; Grafman, Jordan; Cohen, Alexander L; Fox, Michael D	October 15, 2023	Not Determined
36570046	Create Study	Phase matters when there is power: Phasic modulation of corticospinal excitability occurs at high amplitude sensorimotor mu-oscillations.	Neuroimage. Reports	Ozdemir, Recep A; Kirkman, Sofia; Magnuson, Justine R; Fried, Peter J; Pascual-Leone, Alvaro; Shafi, Mouhsin M	December 1, 2022	Not Determined
36394118	Create Study	Tubers Affecting the Fusiform Face Area Are Associated with Autism Diagnosis.	Annals of neurology	Cohen, Alexander L; Kroeck, Mallory R; Wall, Juliana; McManus, Peter; Ovchinnikova, Arina; Sahin, Mustafa; Krueger, Darcy A; Bebin, E Martina; Northrup, Hope; Wu, Joyce Y; Warfield, Simon K; Peters, Jurriaan M; Fox, Michael D; Tuberous Sclerosis Complex Autism Center of Excellence Network Study Group	March 1, 2023	Not Determined
36309331	Create Study	Effect of group-based vs individualized stimulation site selection on reliability of network-targeted TMS.	NeuroImage	Menardi, Arianna; Ozdemir, Recep A; Momi, Davide; Tadayon, Ehsan; Boucher, Pierre; Vallesi, Antonino; Pascual-Leone, Alvaro; Shafi, Mouhsin M; Santarnecchi, Emiliano	December 1, 2022	Not Determined
36226896	Create Study	Neurophysiologic predictors of individual risk for post-operative delirium after elective surgery.	Journal of the American Geriatrics Society	Ross, Jessica M; Santarnecchi, Emiliano; Lian, Shu Jing; Fong, Tamara G; Touroutoglou, Alexandra; Cavallari, Michele; Travison, Thomas G; Marcantonio, Edward R; Libermann, Towia A; Schmitt, Eva M; Inouye, Sharon K; Shafi, Mouhsin M; Pascual-Leone, Alvaro; SAGES II Study Group	January 1, 2023	Not Determined
35977840	Create Study	Clinical and Structural Findings in Patients With Lesion-Induced Dystonia: Descriptive and Quantitative Analysis of Published Cases.	Neurology	Corp, Daniel T; Greenwood, Christopher J; Morrison-Ham, Jordan; Pullinen, Jaakko; McDowall, Georgia M; Younger, Ellen F P; Jinnah, Hyder A; Fox, Michael D; Joutsa, Juho	November 1, 2022	Not Determined
35868885	Create Study	Bringing Human Brain Connectomics to Clinical Practice in Psychiatry.	Biological psychiatry	Siddiqi, Shan H; Taylor, Joseph J; Horn, Andreas; Fox, Michael D	March 1, 2023	Not Determined
35575827	Create Study	Lesion network mapping of mania using different normative connectomes.	Brain structure & function	Cotovio, Gonçalo; Faro Viana, Francisco; Fox, Michael D; Oliveira-Maia, Albino J	December 1, 2022	Not Determined
35082350	Create Study	A structured ICA-based process for removing auditory evoked potentials.	Scientific reports	Ross, Jessica M; Ozdemir, Recep A; Lian, Shu Jing; Fried, Peter J; Schmitt, Eva M; Inouye, Sharon K; Pascual-Leone, Alvaro; Shafi, Mouhsin M	January 26, 2022	Not Determined
35037938	Create Study	A brain network for deep brain stimulation induced cognitive decline in Parkinson''s disease.	Brain : a journal of neurology	Reich, Martin M; Hsu, Joey; Ferguson, Michael; Schaper, Frederic L W V J; Joutsa, Juho; Roothans, Jonas; Nickl, Robert C; Frankemolle-Gilbert, Anneke; Alberts, Jay; Volkmann, Jens; Fox, Michael D	May 24, 2022	Not Determined
35026844	Create Study	A neural network for tics: insights from causal brain lesions and deep brain stimulation.	Brain : a journal of neurology	Ganos, Christos; Al-Fatly, Bassam; Fischer, Jan-Frederik; Baldermann, Juan-Carlos; Hennen, Christina; Visser-Vandewalle, Veerle; Neudorfer, Clemens; Martino, Davide; Li, Jing; Bouwens, Tim; Ackermanns, Linda; Leentjens, Albert F G; Pyatigorskaya, Nadya; Worbe, Yulia; Fox, Michael D; Kühn, Andrea A; Horn, Andreas	December 19, 2022	Not Determined
34961965	Create Study	Network Localization of Unconscious Visual Perception in Blindsight.	Annals of neurology	Kletenik, Isaiah; Ferguson, Michael A; Bateman, James R; Cohen, Alexander L; Lin, Christopher; Tetreault, Aaron; Pelak, Victoria S; Anderson, Clark Alan; Prasad, Sashank; Darby, Richard Ryan; Fox, Michael D	February 1, 2022	Not Determined
34958874	Create Study	Toward personalized medicine in connectomic deep brain stimulation.	Progress in neurobiology	Hollunder, Barbara; Rajamani, Nanditha; Siddiqi, Shan H; Finke, Carsten; Kühn, Andrea A; Mayberg, Helen S; Fox, Michael D; Neudorfer, Clemens; Horn, Andreas	March 1, 2022	Not Determined
34855450	Create Study	Coordinate Network Mapping: An Emerging Approach for Morphometric Meta-Analysis.	The American journal of psychiatry	Taylor, Joseph J; Siddiqi, Shan H; Fox, Michael D	December 1, 2021	Not Determined
34799873	Create Study	Phase-dependent local brain states determine the impact of image-guided transcranial magnetic stimulation on motor network electroencephalographic synchronization.	The Journal of physiology	Momi, Davide; Ozdemir, Recep A; Tadayon, Ehsan; Boucher, Pierre; Di Domenico, Alberto; Fasolo, Mirco; Shafi, Mouhsin M; Pascual-Leone, Alvaro; Santarnecchi, Emiliano	March 1, 2022	Not Determined
34707206	Create Study	Sham-derived effects and the minimal reliability of theta burst stimulation.	Scientific reports	Boucher, P O; Ozdemir, R A; Momi, D; Burke, M J; Jannati, A; Fried, P J; Pascual-Leone, A; Shafi, M M; Santarnecchi, Emiliano	October 27, 2021	Relevant
34454698	Create Study	A Neural Circuit for Spirituality and Religiosity Derived From Patients With Brain Lesions.	Biological psychiatry	Ferguson, Michael A; Schaper, Frederic L W V J; Cohen, Alexander; Siddiqi, Shan; Merrill, Sarah M; Nielsen, Jared A; Grafman, Jordan; Urgesi, Cosimo; Fabbro, Franco; Fox, Michael D	February 15, 2022	Not Determined
34239076	Create Study	Brain stimulation and brain lesions converge on common causal circuits in neuropsychiatric disease.	Nature human behaviour	Siddiqi, Shan H; Schaper, Frederic L W V J; Horn, Andreas; Hsu, Joey; Padmanabhan, Jaya L; Brodtmann, Amy; Cash, Robin F H; Corbetta, Maurizio; Choi, Ki Sueng; Dougherty, Darin D; Egorova, Natalia; Fitzgerald, Paul B; George, Mark S; Gozzi, Sophia A; Irmen, Frederike; Kuhn, Andrea A; Johnson, Kevin A; Naidech, Andrew M; Pascual-Leone, Alvaro; Phan, Thanh G; Rouhl, Rob P W; Taylor, Stephan F; Voss, Joel L; Zalesky, Andrew; Grafman, Jordan H; Mayberg, Helen S; Fox, Michael D	December 1, 2021	Not Determined
34127688	Create Study	Perturbation of resting-state network nodes preferentially propagates to structurally rather than functionally connected regions.	Scientific reports	Momi, Davide; Ozdemir, Recep A; Tadayon, Ehsan; Boucher, Pierre; Di Domenico, Alberto; Fasolo, Mirco; Shafi, Mouhsin M; Pascual-Leone, Alvaro; Santarnecchi, Emiliano	June 14, 2021	Not Determined
34126233	Create Study	Reproducibility of cortical response modulation induced by intermittent and continuous theta-burst stimulation of the human motor cortex.	Brain stimulation	Ozdemir, Recep A; Boucher, Pierre; Fried, Peter J; Momi, Davide; Jannati, Ali; Pascual-Leone, Alvaro; Santarnecchi, Emiliano; Shafi, Mouhsin M	July 1, 2021	Relevant
33899085	Create Study	Lesion network mapping predicts post-stroke behavioural deficits and improves localization.	Brain : a journal of neurology	Cohen, Alexander L; Ferguson, Michael A; Fox, Michael D	May 7, 2021	Not Determined
33704826	Create Study	Electroencephalographic Abnormalities are Common in COVID-19 and are Associated with Outcomes.	Annals of neurology	Lin, Lu; Al-Faraj, Abrar; Ayub, Neishay; Bravo, Pablo; Das, Sudeshna; Ferlini, Lorenzo; Karakis, Ioannis; Lee, Jong Woo; Mukerji, Shibani S; Newey, Christopher R; Pathmanathan, Jay; Abdennadher, Myriam; Casassa, Charles; Gaspard, Nicolas; Goldenholz, Daniel M; Gilmore, Emily J; Jing, Jin; Kim, Jennifer A; Kimchi, Eyal Y; Ladha, Harshad S; Tobochnik, Steven; Zafar, Sahar; Hirsch, Lawrence J; Westover, M Brandon; Shafi, Mouhsin M	May 1, 2021	Not Determined
33588105	Create Study	Cortical responses to noninvasive perturbations enable individual brain fingerprinting.	Brain stimulation	Ozdemir, Recep A; Tadayon, Ehsan; Boucher, Pierre; Sun, Haoqi; Momi, Davide; Ganglberger, Wolfgang; Westover, M Brandon; Pascual-Leone, Alvaro; Santarnecchi, Emiliano; Shafi, Mouhsin M	March 1, 2021	Relevant
33385561	Create Study	Network-level macroscale structural connectivity predicts propagation of transcranial magnetic stimulation.	NeuroImage	Momi, Davide; Ozdemir, Recep A; Tadayon, Ehsan; Boucher, Pierre; Shafi, Mouhsin M; Pascual-Leone, Alvaro; Santarnecchi, Emiliano	April 1, 2021	Relevant
33002764	Create Study	LTP-like plasticity is impaired in amyloid-positive amnestic MCI but independent of PET-amyloid burden.	Neurobiology of aging	Buss, Stephanie S; Press, Daniel Z; McDonald, Katherine; Kitchener, Erin; O'Connor, Margaret; Donohoe, Kevin; Shafi, Mouhsin M; Pascual-Leone, Alvaro; Fried, Peter J	December 1, 2020	Not Determined
32831292	Create Study	Mapping mania symptoms based on focal brain damage.	The Journal of clinical investigation	Cotovio, Gonçalo; Talmasov, Daniel; Barahona-Corrêa, J Bernardo; Hsu, Joey; Senova, Suhan; Ribeiro, Ricardo; Soussand, Louis; Velosa, Ana; Silva, Vera Cruz E; Rost, Natalia; Wu, Ona; Cohen, Alexander L; Oliveira-Maia, Albino J; Fox, Michael D	October 1, 2020	Not Determined
32702488	Create Study	Opportunities of connectomic neuromodulation.	NeuroImage	Horn, Andreas; Fox, Michael D	November 1, 2020	Not Determined
32193345	Create Study	Individualized perturbation of the human connectome reveals reproducible biomarkers of network dynamics relevant to cognition.	Proceedings of the National Academy of Sciences of the United States of America	Ozdemir, Recep A; Tadayon, Ehsan; Boucher, Pierre; Momi, Davide; Karakhanyan, Kelly A; Fox, Michael D; Halko, Mark A; Pascual-Leone, Alvaro; Shafi, Mouhsin M; Santarnecchi, Emiliano	April 7, 2020	Relevant
32090281	Create Study	EEG Functional Connectivity is a Weak Predictor of Causal Brain Interactions.	Brain topography	Vink, Jord J T; Klooster, Deborah C W; Ozdemir, Recep A; Westover, M Brandon; Pascual-Leone, Alvaro; Shafi, Mouhsin M	March 1, 2020	Not Determined
31727363	Create Study	EEG spectral power abnormalities and their relationship with cognitive dysfunction in patients with Alzheimer''s disease and type 2 diabetes.	Neurobiology of aging	Benwell, Christopher S Y; Davila-Pérez, Paula; Fried, Peter J; Jones, Richard N; Travison, Thomas G; Santarnecchi, Emiliano; Pascual-Leone, Alvaro; Shafi, Mouhsin M	January 1, 2020	Not Determined
31672091	Create Study	Self-Reported Cognitive Function and Mental Health Diagnoses among Former Professional American-Style Football Players.	Journal of neurotrauma	Plessow, Franziska; Pascual-Leone, Alvaro; McCracken, Caitlin M; Baker, Jillian; Krishnan, Supriya; Baggish, Aaron; Connor, Ann; Courtney, Theodore K; Nadler, Lee M; Speizer, Frank E; Taylor, Herman A; Weisskopf, Marc G; Zafonte, Ross D; Meehan , III, William P	April 15, 2020	Not Determined
31449296	Create Study	Association of Concussion Symptoms With Testosterone Levels and Erectile Dysfunction in Former Professional US-Style Football Players.	JAMA neurology	Grashow, Rachel; Weisskopf, Marc G; Miller, Karen K; Nathan, David M; Zafonte, Ross; Speizer, Frank E; Courtney, Theodore K; Baggish, Aaron; Taylor, Herman A; Pascual-Leone, Alvaro; Nadler, Lee M; Roberts, Andrea L	December 1, 2019	Not Determined
31210374	Create Study	The Football Players'' Health Study at Harvard University: Design and objectives.	American journal of industrial medicine	Zafonte, Ross; Pascual-Leone, Alvaro; Baggish, Aaron; Weisskopf, Marc G; Taylor, Herman A; Connor, Ann; Baker, Jillian; Cohan, Sarah; Valdivia, Chelsea; Courtney, Theodore K; Cohen, I Glenn; Speizer, Frank E; Nadler, Lee M	August 1, 2019	Not Determined
31134638	Create Study	Multisystem afflictions in former National Football League players.	American journal of industrial medicine	Morris, Timothy P; McCracken, Caitlin; Baggish, Aaron; Weisskopf, Marc; Zafonte, Ross; Taylor, Herman A; Nadler, Lee M; Speizer, Frank E; Pascual-Leone, Alvaro	August 1, 2019	Not Determined
30746383	Create Study	Defining Exposures in Professional Football: Professional American-Style Football Players as an Occupational Cohort.	Orthopaedic journal of sports medicine	Grashow, Rachel G; Roberts, Andrea L; Zafonte, Ross; Pascual-Leone, Alvaro; Taylor, Herman; Baggish, Aaron; Nadler, Lee; Courtney, Theodore K; Connor, Ann; Weisskopf, Marc G	February 1, 2019	Not Determined
30720478	Create Study	Therapeutic noninvasive brain stimulation in Alzheimer''s disease and related dementias.	Current opinion in neurology	Buss, Stephanie S; Fried, Peter J; Pascual-Leone, Alvaro	April 1, 2019	Not Determined

helpcenter.collection.publications-tab

Collection - Publications

The number of Publications is displayed in parentheses next to the tab name. Clicking on any of the Publication Titles will open the Publication in a new internet browsing tab.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may mark a publication as either Relevant or Not Relevant in the Status column.

Frequently Asked Questions

How can I determine if a publication is relevant?

Publications are considered relevant to a collection when the data shared is directly related to the project or collection.
Where does the NDA get the publications?

PubMed, an online library containing journals, articles, and medical research. Sponsored by NiH and National Library of Medicine (NLM).

Glossary

Create Study

A link to the Create an NDA Study page that can be clicked to start creating an NDA Study with information such as the title, journal and authors automatically populated.
Not Determined Publication

Indicates that the publication has not yet been reviewed and/or marked as Relevant or Not Relevant so it has not been determined whether an NDA Study is expected.
Not Relevant Publication

A publication that is not based on data related to the aims of the grant/project associated with the Collection or not based on any data such as a review article and, therefore, an NDA Study is not expected to be created.
PubMed

PubMed provides citation information for biomedical and life sciences publications and is managed by the U.S. National Institutes of Health's National Library of Medicine.
PubMed ID

The PUBMed ID is the unique ID number for the publication as recorded in the PubMed database.
Relevant Publication

A publication that is based on data related to the aims of the grant/project associated with the Collection and, therefore, an NDA Study is expected to be created.

Contact NDA Help Desk

Data Expected List: Mandatory Data Structures

These data structures are mandatory for your NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

For NIMH HIV-related research that involves human research participants: Select the dictionary or dictionaries most appropriate for your research. If your research does not require all three data dictionaries, just ignore the ones you do not need. There is no need to delete extra data dictionaries from your NDA Collection. You can adjust the Targeted Enrollment column in the Data Expected tab to “0” for those unnecessary data dictionaries. At least one of the three data dictionaries must have a non-zero value.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
Research Subject and Pedigree	120	07/15/2019	88	11/15/2019	76	Approved

To create your project's Data Expected list, use the "+New Data Expected" to add or request existing structures and to request new Data Structures that are not in the NDA Data Dictionary.

If the Structure you need already exists, locate it and specify your dates and enrollment when adding it to your Data Expected list. If you require changes to the Structure you need, select the indicator stating "No, it requires changes to meet research needs," and upload a file containing your requested changes.

If the structure you need is not yet defined in the Data Dictionary, you can select "Upload Definition" and attach the necessary materials to request its creation.

When selecting the expected dates for your data, make sure to follow the standard Data Sharing Regimen and choose dates within the date ranges that correspond to your project start and end dates.

Please visit the Completing Your Data Expected Tutorial for more information.

Data Expected List: Data Structures per Research Aims

These data structures are specific to your research aims and should list all data structures in which data will be collected and submitted for this NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
EMG Session	120	07/15/2020	0	01/15/2024	0	Approved
Imaging (Structural, fMRI, DTI, PET, microscopy)	120	07/15/2019	58	11/15/2019	52	Approved
EEG	120	07/15/2019	53	11/15/2019	44	Approved

Structure not yet defined

No Status history for this Data Expected has been recorded yet

helpcenter.collection.data-expected-tab

Collection - Data Expected

The Data Expected tab displays the list of all data that NDA expects to receive in association with the Collection as defined by the contributing researcher, as well as the dates for the expected initial upload of the data, and when it is first expected to be shared, or with the research community. Above the primary table of Data Expected, any publications determined to be relevant to the data within the Collection are also displayed - members of the contributing research group can use these to define NDA Studies, connecting those papers to underlying data in NDA.

The tab is used both as a reference for those accessing shared data, providing information on what is expected and when it will be shared, and as the primary tracking mechanism for contributing projects. It is used by both contributing primary researchers, secondary researchers, and NIH Program and Grants Management staff.

Researchers who are starting their project need to update their Data Expected list to include all the Data Structures they are collecting under their grant and set their initial submission and sharing schedule according to the NDA Data Sharing Regimen.

To add existing Data Structures from the Data Dictionary, to request new Data Structure that are not in the Dictionary, or to request changes to existing Data Structures, click "+New Data Expected".

For step-by-step instructions on how to add existing Data Structures, request changes to an existing Structure, or request a new Data Structure, please visit the Completing Your Data Expected Tutorial.

If you are a contributing researcher creating this list for the first time, or making changes to the list as your project progress, please note the following:

Although items you add to the list and changes you make are displayed, they are not committed to the system until you Save the entire page using the "Save" button at the bottom of your screen. Please Save after every change to ensure none of your work is lost.
If you attempt to add a new structure, the title you provide must be unique - if another structure exists with the same name your change will fail.
Adding a new structure to this list is the only way to request the creation of a new Data Dictionary definition.

Frequently Asked Questions

What is an NDA Data Structure?

An NDA Data Structure is comprised of multiple Data Elements to make up an electronic definition of an assessment, measure, questionnaire, etc will have a corresponding Data Structure.
What is the NDA Data Dictionary?

The NDA Data Dictionary is comprised of electronic definitions known as Data Structures.

Glossary

Analyzed Data

Data specific to the primary aims of the research being conducted (e.g. outcome measures, other dependent variables, observations, laboratory results, analyzed images, volumetric data, etc.) including processed images.
Data Item

Items listed on the Data Expected list in the Collection which may be an individual and discrete Data Structure, Data Structure Category, or Data Structure Group.
Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Structure Category

An NDA term describing the affiliation of a Data Structure to a Category, which may be disease/disorder or diagnosis related (Depression, ADHD, Psychosis), specific to data type (MRI, eye tracking, omics), or type of data (physical exam, IQ).
Data Structure Group

A Data Item listed on the Data Expected tab of a Collection that indicates a group of Data Structures (e.g., ADOS or SCID) for which data may be submitted instead of a specific Data Structure identified by version, module, edition, etc. For example, the ADOS Data Structure Category includes every ADOS Data Structure such as ADOS Module 1, ADOS Module 2, ADOS Module 1 - 2nd Edition, etc. The SCID Data Structure Group includes every SCID Data Structure such as SCID Mania, SCID V Mania, SCID PTSD, SCID-V Diagnosis, and more.
Evaluated Data

A new Data Structure category, Evaluated Data is analyzed data resulting from the use of computational pipelines in the Cloud and can be uploaded directly back to a miNDAR database. Evaluated Data is expected to be listed as a Data Item in the Collection's Data Expected Tab.
Imaging Data

Imaging+ is an NDA term which encompasses all imaging related data including, but not limited to, images (DTI, MRI, PET, Structural, Spectroscopy, etc.) as well as neurosignal data (EEG, fMRI, MEG, EGG, eye tracking, etc.) and Evaluated Data.
Initial Share Date

Initial Submission and Initial Share dates should be populated according to the NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data will be shared with authorized users upon publication (via an NDA Study) or 1-2 years after the grant end date specified on the first Notice of Award, as defined in the applicable Data Sharing Terms and Conditions.
Initial Submission Date

Initial Submission and Initial Share dates should be populated according to these NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data for all subjects is not expected on the Initial Submission Date and modifications may be made as necessary based on the project's conduct.
Research Subject and Pedigree

An NDA created Data Structure used to convey basic information about the subject such as demographics, pedigree (links family GUIDs), diagnosis/phenotype, and sample location that are critical to allow for easier querying of shared data.
Submission Cycle

The NDA has two Submission Cycles per year - January 15 and July 15.
Submission Exemption

An interface to notify NDA that data may not be submitted during the upcoming/current submission cycle.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Associated Studies

Studies that have been defined using data from a Collection are important criteria to determine the value of data shared. The number of subjects column displays the counts from this Collection that are included in a Study, out of the total number of subjects in that study. The Data Use column represents whether or not the study is a primary analysis of the data or a secondary analysis. State indicates whether the study is private or shared with the research community.

Study NameFilter by Study Name	AbstractFilter by Abstract	Collection/Study SubjectsFilter by Collection/Study Subjects	Data UsageFilter by Data Usage	StateFilter by State
No records found.

helpcenter.collection.associated-studies-tab

Collection - Associated Studies

Clicking on the Study Title will open the study details in a new internet browser tab. The Abstract is available for viewing, providing the background explanation of the study, as provided by the Collection Owner.

Primary v. Secondary Analysis: The Data Usage column will have one of these two choices. An associated study that is listed as being used for Primary Analysis indicates at least some and potentially all of the data used was originally collected by the creator of the NDA Study. Secondary Analysis indicates the Study owner was not involved in the collection of data, and may be used as supporting data.

Private v. Shared State: Studies that remain private indicate the associated study is only available to users who are able to access the collection. A shared study is accessible to the general public.

Frequently Asked Questions

How do I associate a study to my collection?

Studies are associated to the Collection automatically when the data is defined in the Study.

Glossary

Associated Studies Tab

A tab in a Collection that lists the NDA Studies that have been created using data from that Collection including both Primary and Secondary Analysis NDA Studies.

Contact NDA Help Desk

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Glossary