NIMH Data Archive - Data

Genomics

Neuroimaging

Phenotype¹

New Trial
Clinical Trial

¹ Numbers reported are subjects by age

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Grant/Project Number

Format should be in the following format: Activity Code, Institute Abbreviation, and Serial Number. Grant Type, Support Year, and Suffix should be excluded. For example, grant 1R01MH123456-01A1 should be entered R01MH123456

Collection - Use Existing Experiment

To associate an experiment to the current collection, just select an axperiment from the table below then click the associate experiment button to persist your changes (saving the collection is not required). Note that once an experiment has been associated to two or more collections, the experiment will not longer be editable.

The table search feature is case insensitive and targets the experiment id, experiment name and experiment type columns. The experiment id is searched only when the search term entered is a number, and filtered using a startsWith comparison. When the search term is not numeric the experiment name is used to filter the results.

Select	Experiment Id	Experiment Name	Experiment Type	Created On

24	HI-NGS_R1	Omics	02/16/2011
475	MB1-10 (CHOP)	Omics	06/07/2016
490	Illumina Infinium PsychArray BeadChip Assay	Omics	07/07/2016
501	PharmacoBOLD Resting State	fMRI	07/27/2016
506	PVPREF	Omics	08/05/2016
509	ABC-CT Resting v2	EEG	08/18/2016
13	Comparison of FI expression in Autistic and Neurotypical Homo Sapiens	Omics	12/28/2010
18	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	01/06/2011
22	Stitching PCR Sequencing	Omics	02/14/2011
26	ASD_Methylation	Omics	03/01/2011
29	Microarray family 03 (father, mother, sibling)	Omics	03/24/2011
37	Standard paired-end sequencing of BCRs	Omics	04/19/2011
38	Illumina Mate-Pair BCR sequencing	Omics	04/19/2011
39	Custom Jumping Libraries	Omics	04/19/2011
40	Custom CapBP	Omics	04/19/2011
41	Immunofluorescence	Omics	05/11/2011
43	Autism brain sample genotyping, Illumina	Omics	05/16/2011
47	ARRA Autism Sequencing Collaboration at Baylor. SOLiD 4 System	Omics	08/01/2011
53	AGRE Omni1-quad	Omics	10/11/2011
59	AGP genotyping	Omics	04/03/2012
60	Ultradeep 454 sequencing of synaptic genes from postmortem cerebella of individuals with ASD and neurotypical controls	Omics	06/23/2012
63	Microemulsion PCR and Targeted Resequencing for Variant Detection in ASD	Omics	07/20/2012
76	Whole Genome Sequencing in Autism Families	Omics	01/03/2013
519	Resting	fMRI	11/08/2016
90	Genotyped IAN Samples	Omics	07/09/2013
91	NJLAGS Axiom Genotyping Array	Omics	07/16/2013
93	AGP genotyping (CNV)	Omics	09/06/2013
106	Longitudinal Sleep Study. H20 200. Channel set 2	EEG	11/07/2013
107	Longitudinal Sleep Study. H20 200. Channel set 3	EEG	11/07/2013
108	Longitudinal Sleep Study. AURA 200	EEG	11/07/2013
105	Longitudinal Sleep Study. H20 200. Channel set 1	EEG	11/07/2013
109	Longitudinal Sleep Study. AURA 400	EEG	11/07/2013
116	Gene Expression Analysis WG-6	Omics	01/07/2014
131	Jeste Lab UCLA ACEii: Charlie Brown and Sesame Street - Project 1	Eye Tracking	02/27/2014
132	Jeste Lab UCLA ACEii: Animacy - Project 1	Eye Tracking	02/27/2014
133	Jeste Lab UCLA ACEii: Mom Stranger - Project 2	Eye Tracking	02/27/2014
134	Jeste Lab UCLA ACEii: Face Emotion - Project 3	Eye Tracking	02/27/2014
145	AGRE/FMR1_Illumina.JHU	Omics	04/14/2014
146	AGRE/MECP2_Sanger.JHU	Omics	04/14/2014
147	AGRE/MECP2_Junior.JHU	Omics	04/14/2014
151	Candidate Gene Identification in familial Autism	Omics	06/09/2014
152	NJLAGS Whole Genome Sequencing	Omics	07/01/2014
154	Math Autism Study - Vinod Menon	fMRI	07/15/2014
155	Resting	fMRI	07/25/2014
156	Speech	fMRI	07/25/2014
159	Emotion	fMRI	07/25/2014
160	syllable contrast	EEG	07/29/2014
167	School-age naturalistic stimuli	Eye Tracking	09/19/2014
44	AGRE/Broad Affymetrix 5.0 Genotype Experiment	Omics	06/27/2011
45	Exome Sequencing of 20 Sporadic Cases of Autism Spectrum Disorder	Omics	07/15/2011

Collection - Add Experiment

Add Supporting Documentation

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URL:

To add an existing Data Structure, enter its title in the search bar. If you need to request changes, select the indicator "No, it requires changes to meet research needs" after selecting the Structure, and upload the file with the request changes specific to the selected Data Structure. Your file should follow the Request Changes Procedure. If the Data Structure does not exist, select "Request New Data Structure" and upload the appropriate zip file.

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Data-driven solutions for temporal, spatial, and spatiotemporal dynamic functional connectivity #3844

General
Experiments (4)
Shared Data
Publications (99)
Data Expected (2)
Associated Studies (0)

Collection Title	Collection Investigators	Collection Description
Collection Title:	Data-driven solutions for temporal, spatial, and spatiotemporal dynamic functional connectivity
Collection Investigators:	Vince Calhoun
Collection Description:	Existing approaches to estimate and characterize whole brain time-varying connectivity from fMRI data have shown considerable promise, with exponential growth in research in this field. We and others have developed a powerful set of tools that are now in wide use in the community. However, the impact of mental illness on brain connectivity is complex, and as we show, limitations in existing methods often result in missing important features associated with brain disorders e.g. transient fractionation of the spatial structure of brain networks. Some of these important limitations include 1 the most widely-used approaches often require a number of prior and limiting assumptions that are not well studied, 2 methods often assume linear relationships either within or between networks over time, and 3 methods assume spatially fixed nodes and ignore the possibility of spatially fluid evolution of networks over time. We propose a novel family of models that builds on the well-structured framework of joint blind source separation to capture a more complete characterization of potentially nonlinear spatio-temporal dynamics while providing a way to relax other limiting assumptions. Our models will also produce a rich set of metrics to characterize the available dynamics and enable in depth comparison with currently avail-able models including those that are model based. We will extensively validate our approaches in a variety of ways including simulations and evaluation of rigor and robustness in large normative data sets. Finally, we will apply the developed tools to study the important area of dynamic properties in mental illnesses including schiz-ophrenia, bipolar disorder, and the autism spectrum. There is considerable evidence of disruption of dynamics in all three disorders, and as we show the use of static or even exiting dynamic approaches can miss important information about brain related differences associated with each. We will provide open source tools and release data throughout the duration of the project via a web portal and the NITRC repository, hence enabling other investigators to use our approaches and compare their own methods with our own. Our tools have wide appli-cation to the study of the healthy brain as well as many other diseases such as Alzheimer's disease and attention deficit hyperactivity disorder. 38
Data Repository:	NIMH Data Archive
Permission Group:
Collection Creation Date:	03/25/2021
Collection Phase:	Enrolling
Blinded Clinical Trial:	No
Total Funded Amount:	$2,580,505.00
Subjects Shared:	21

{"values":[]}

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Funding Sources:

Funding Source Name	Funding Source URL
NIH - Extramural	None

Supporting Documentation:

Grant Information:

Project Number	Project Title	Start Date	End Date	Planned Enrollment	Actual Enrollment	Organization	Funds Obligated
R01MH123610-01	Data-driven solutions for temporal, spatial, and spatiotemporal dynamic functional connectivity	03/19/2021	01/31/2026	Not Reported	Not Reported	GEORGIA STATE UNIVERSITY	$2,580,505.00

Clinical Trials:

helpcenter.collection.general-tab

Collection - General Tab

Fields available for edit on the top portion of the page include:

Collection Title
Investigators
Collection Description
Collection Phase
Funding Source
Clinical Trials

Collection Phase: The current status of a research project submitting data to an NDA Collection, based on the timing of the award and/or the data that have been submitted.

Pre-Enrollment: The default entry made when the NDA Collection is created.
Enrolling: Data have been submitted to the NDA Collection or the NDA Data Expected initial submission date has been reached for at least one data structure category in the NDA Collection.
Data Analysis: Subject level data collection for the research project is completed and has been submitted to the NDA Collection. The NDA Collection owner or the NDA Help Desk may set this phase when they’ve confirmed data submission is complete and submitted subject counts match at least 90% of the target enrollment numbers in the NDA Data Expected. Data submission reminders will be turned off for the NDA Collection.
Funding Completed: The NIH grant award (or awards) associated with the NDA Collection has reached its end date. NDA Collections in Funding Completed phase are assigned a subphase to indicate the status of data submission.
- The Data Expected Subphase indicates that NDA expects more data will be submitted
- The Closeout Subphase indicates the data submission is complete.
- The Sharing Not Met Subphase indicates that data submission was not completed as expected.

Blinded Clinical Trial Status:

This status is set by a Collection Owner and indicates the research project is a double blinded clinical trial. When selected, the public view of Data Expected will show the Data Expected items and the Submission Dates, but the targeted enrollment and subjects submitted counts will not be displayed.
Targeted enrollment and subjects submitted counts are visible only to NDA Administrators and to the NDA Collection or as the NDA Collection Owner.
When an NDA Collection that is flagged Blinded Clinical Trial reaches the maximum data sharing date for that Data Repository (see https://nda.nih.gov/nda/sharing-regimen.html), the embargo on Data Expected information is released.

Funding Source

The organization(s) responsible for providing the funding is listed here.

Supporting Documentation

Users with Submission privileges, as well as Collection Owners, Program Officers, and those with Administrator privileges, may upload and attach supporting documentation. By default, supporting documentation is shared to the general public, however, the option is also available to limit this information to qualified researchers only.

Grant Information

Identifiable details are displayed about the Project of which the Collection was derived from. You may click in the Project Number to view a full report of the Project captured by the NIH.

Clinical Trials

Any data that is collected to support or further the research of clinical studies will be available here. Collection Owners and those with Administrator privileges may add new clinical trials.

Frequently Asked Questions

How does the NIMH Data Archive (NDA) determine which Permission Group data are submitted into?

During Collection creation, NDA staff determine the appropriate Permission Group based on the type of data to be submitted, the type of access that will be available to data access users, and the information provided by the Program Officer during grant award.
How do I know when a NDA Collection has been created?

When a Collection is created by NDA staff, an email notification will automatically be sent to the PI(s) of the grant(s) associated with the Collection to notify them.
Is a single grant number ever associated with more than one Collection?

The NDA system does not allow for a single grant to be associated with more than one Collection; therefore, a single grant will not be listed in the Grant Information section of a Collection for more than one Collection.
Why is there sometimes more than one grant included in a Collection?

In general, each Collection is associated with only one grant; however, multiple grants may be associated if the grant has multiple competing segments for the same grant number or if multiple different grants are all working on the same project and it makes sense to hold the data in one Collection (e.g., Cooperative Agreements).

Glossary

Administrator Privilege

A privilege provided to a user associated with an NDA Collection or NDA Study whereby that user can perform a full range of actions including providing privileges to other users.
Collection Owner

Generally, the Collection Owner is the contact PI listed on a grant. Only one NDA user is listed as the Collection owner. Most automated emails are primarily sent to the Collection Owner.
Collection Phase
The Collection Phase provides information on data submission as opposed to grant/project completion so while the Collection phase and grant/project phase may be closely related they are often different. Collection users with Administrative Privileges are encouraged to edit the Collection Phase. The Program Officer as listed in eRA (for NIH funded grants) may also edit this field. Changes must be saved by clicking the Save button at the bottom of the page. This field is sortable alphabetically in ascending or descending order. Collection Phase options include:
- Pre-Enrollment: A grant/project has started, but has not yet enrolled subjects.
- Enrolling: A grant/project has begun enrolling subjects. Data submission is likely ongoing at this point.
- Data Analysis: A grant/project has completed enrolling subjects and has completed all data submissions.
- Funding Completed: A grant/project has reached the project end date.
Collection Title

An editable field with the title of the Collection, which is often the title of the grant associated with the Collection.
Grant

Provides the grant number(s) for the grant(s) associated with the Collection. The field is a hyperlink so clicking on the Grant number will direct the user to the grant information in the NIH Research Portfolio Online Reporting Tools (RePORT) page.
Supporting Documentation

Various documents and materials to enable efficient use of the data by investigators unfamiliar with the project and may include the research protocol, questionnaires, and study manuals.
NIH Research Initiative

NDA Collections may be organized by scientific similarity into NIH Research Initiatives, to facilitate query tool user experience. NIH Research Initiatives map to one or multiple Funding Opportunity Announcements.
Permission Group

Access to shared record-level data in NDA is provisioned at the level of a Permission Group. NDA Permission Groups consist of one or multiple NDA Collections that contain data with the same subject consents.
Planned Enrollment

Number of human subject participants to be enrolled in an NIH-funded clinical research study. The data is provided in competing applications and annual progress reports.
Actual Enrollment

Number of human subjects enrolled in an NIH-funded clinical research study. The data is provided in annual progress reports.
NDA Collection

A virtual container and organization structure for data and associated documentation from one grant or one large project/consortium. It contains tools for tracking data submission and allows investigators to define a wide array of other elements that provide context for the data, including all general information regarding the data and source project, experimental parameters used to collect any event-based data contained in the Collection, methods, and other supporting documentation. They also allow investigators to link underlying data to an NDA Study, defining populations and subpopulations specific to research aims.
Data Use Limitations

Data Use Limitations (DULs) describe the appropriate secondary use of a dataset and are based on the original informed consent of a research participant. NDA only accepts consent-based data use limitations defined by the NIH Office of Science Policy.
Total Subjects Shared

The total number of unique subjects for whom data have been shared and are available for users with permission to access data.

Contact NDA Help Desk

ID	Name	Created Date	Status	Type
2144	rsfMRI	12/21/2022	Approved	fMRI
2324	T1 MPRage	07/19/2023	Approved	fMRI
2357	MR diffusion	08/08/2023	Approved	fMRI
2577	Resting_State_physio	03/07/2024	Approved	fMRI

helpcenter.collection.experiments-tab

Collection - Experiments

The number of Experiments included is displayed in parentheses next to the tab name. You may download all experiments associated with the Collection via the Download button. You may view individual experiments by clicking the Experiment Name and add them to the Filter Cart via the Add to Cart button.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may create or edit an Experiment.

Please note: The creation of an NDA Experiment does not necessarily mean that data collected, according to the defined Experiment, has been submitted or shared.

Frequently Asked Questions

Can an Experiment be associated with more than one Collection?
Yes -see the “Copy” button in the bottom left when viewing an experiment. There are two actions that can be performed via this button:
1. Copy the experiment with intent for modifications.
2. Associate the experiment to the collection. No modifications can be made to the experiment.

Glossary

Experiment Status

An Experiment must be Approved before data using the associated Experiment_ID may be uploaded.
Experiment ID

The ID number automatically generated by NDA which must be included in the appropriate file when uploading data to link the Experiment Definition to the subject record.

Contact NDA Help Desk

Shared Data:

Title	Type	Number of Subjects
Image	Imaging	21

helpcenter.collection.shared-data-tab

Collection - Shared Data

This tab provides a quick overview of the Data Structure title, Data Type, and Number of Subjects that are currently Shared for the Collection. The information presented in this tab is automatically generated by NDA and cannot be edited. If no information is visible on this tab, this would indicate the Collection does not have shared data or the data is private.

The shared data is available to other researchers who have permission to access data in the Collection's designated Permission Group(s). Use the Download button to get all shared data from the Collection to the Filter Cart.

Frequently Asked Questions

How will I know if another researcher uses data that I shared through the NIMH Data Archive (NDA)?

To see what data your project have submitted are being used by a study, simply go the Associated Studies tab of your collection. Alternatively, you may review an NDA Study Attribution Report available on the General tab.
Can I get a supplement to share data from a completed research project?

Often it becomes more difficult to organize and format data electronically after the project has been completed and the information needed to create a GUID may not be available; however, you may still contact a program staff member at the appropriate funding institution for more information.
Can I get a supplement to share data from a research project that is still ongoing?

Unlike completed projects where researchers may not have the information needed to create a GUID and/or where the effort needed to organize and format data becomes prohibitive, ongoing projects have more of an opportunity to overcome these challenges. Please contact a program staff member at the appropriate funding institution for more information.

Glossary

Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Type

A grouping of data by similar characteristics such as Clinical Assessments, Omics, or Neurosignal data.
Shared

The term 'Shared' generally means available to others; however, there are some slightly different meanings based on what is Shared. A Shared NDA Study is viewable and searchable publicly regardless of the user's role or whether the user has an NDA account. A Shared NDA Study does not necessarily mean that data used in the NDA Study have been shared as this is independently determined. Data are shared according the schedule defined in a Collection's Data Expected Tab and/or in accordance with data sharing expectations in the NDA Data Sharing Terms and Conditions. Additionally, Supporting Documentation uploaded to a Collection may be shared independent of whether data are shared.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Publications

Publications relevant to NDA data are listed below. Most displayed publications have been associated with the grant within Pubmed. Use the "+ New Publication" button to add new publications. Publications relevant/not relevant to data expected are categorized. Relevant publications are then linked to the underlying data by selecting the Create Study link. Study provides the ability to define cohorts, assign subjects, define outcome measures and lists the study type, data analysis and results. Analyzed data and results are expected in this way.

PubMed ID	Study	Title	Journal	Authors	Date	Status
39608579	Create Study	Multimodal predictive modeling: Scalable imaging informed approaches to predict future brain health.	Journal of neuroscience methods	Ajith, Meenu; Spence, Jeffrey S; Chapman, Sandra B; Calhoun, Vince D	February 1, 2025	Not Determined
39515581	Create Study	ENIGMA-Meditation: Worldwide Consortium for Neuroscientific Investigations of Meditation Practices.	Biological psychiatry. Cognitive neuroscience and neuroimaging	Ganesan, Saampras; Barrios, Fernando A; Batta, Ishaan; Bauer, Clemens C C; Braver, Todd S; Brewer, Judson A; Brown, Kirk Warren; Cahn, Rael; Cain, Joshua A; Calhoun, Vince D; Cao, Lei; Chetelat, Gaël; Ching, Christopher R K; Creswell, J David; Dagnino, Paulina Clara; Davanger, Svend; Davidson, Richard J; Deco, Gustavo; Dutcher, Janine M; Escrichs, Anira; Eyler, Lisa T; Fani, Negar; Farb, Norman A S; Fialoke, Suruchi; Fresco, David M; Garg, Rahul; Garland, Eric L; Goldin, Philippe; Hafeman, Danella M; Jahanshad, Neda; Kang, Yoona; Khalsa, Sahib S; Kirlic, Namik; Lazar, Sara W; Lutz, Antoine; McDermott, Timothy J; Pagnoni, Giuseppe; Piguet, Camille; Prakash, Ruchika S; Rahrig, Hadley; Reggente, Nicco; Saccaro, Luigi F; Sacchet, Matthew D; Siegle, Greg J; Tang, Yi-Yuan; Thomopoulos, Sophia I; Thompson, Paul M; Torske, Alyssa; Treves, Isaac N; Tripathi, Vaibhav; Tsuchiyagaito, Aki; Turner, Matthew D; Vago, David R; Valk, Sofie; Zeidan, Fadel; Zalesky, Andrew; Turner, Jessica A; King, Anthony P	November 6, 2024	Not Determined
39515403	Create Study	A simple but tough-to-beat baseline for fMRI time-series classification.	NeuroImage	Popov, Pavel; Mahmood, Usman; Fu, Zening; Yang, Carl; Calhoun, Vince; Plis, Sergey	December 1, 2024	Not Determined
39386484	Create Study	A Telescopic Independent Component Analysis on Functional Magnetic Resonance Imaging Data Set.	bioRxiv : the preprint server for biology	Mirzaeian, Shiva; Faghiri, Ashkan; Calhoun, Vince D; Iraji, Armin	September 27, 2024	Not Determined
39314443	Create Study	Addressing Inconsistency in Functional Neuroimaging: A Replicable Data-Driven Multi-Scale Functional Atlas for Canonical Brain Networks.	bioRxiv : the preprint server for biology	Jensen, Kyle M; Turner, Jessica A; Uddin, Lucina Q; Calhoun, Vince D; Iraji, Armin	December 3, 2024	Not Determined
39282412	Create Study	Refining Brain Stimulation Therapies: An Active Learning Approach to Personalization.	bioRxiv : the preprint server for biology	Sendi, Mohammad S E; Cole, Eric R; Piallat, Brigitte; Ellis, Charles A; Eggers, Thomas E; Laxpati, Nealen G; Mahmoudi, Babak; Gutekunst, Claire-Anne; Devergnas, Annaelle; Mayberg, Helen; Gross, Robert E; Calhoun, Vince D	September 3, 2024	Not Determined
39281886	Create Study	Refining Brain Stimulation Therapies: An Active Learning Approach to Personalization.	Research square	Sendi, Mohammad S E; Cole, Eric R; Piallat, Brigitte; Ellis, Charles A; Eggers, Thomas E; Laxpati, Nealen G; Mahmoudi, Babak; Gutekunst, Claire-Anne; Devergnas, Annaelle; Mayberg, Helen; Gross, Robert E; Calhoun, Vince D	September 4, 2024	Not Determined
39251116	Create Study	Local-structure-preservation and redundancy-removal-based feature selection method and its application to the identification of biomarkers for schizophrenia.	NeuroImage	Xing, Ying; Pearlson, Godfrey D; Kochunov, Peter; Calhoun, Vince D; Du, Yuhui	October 1, 2024	Not Determined
39225381	Create Study	Common and unique brain aging patterns between females and males quantified by large-scale deep learning.	Human brain mapping	Du, Yuhui; Yuan, Zhen; Sui, Jing; Calhoun, Vince D	September 1, 2024	Not Determined
39131299	Create Study	Unraveling the Neural Landscape of Mental Disorders using Double Functional Independent Primitives (dFIPs).	bioRxiv : the preprint server for biology	Soleimani, Najme; Iraji, Armin; Pearlson, Godfrey; Preda, Adrian; Calhoun, Vince D	August 2, 2024	Not Determined
39085394	Create Study	Cognitive and psychiatric relevance of dynamic functional connectivity states in a large (N > 10,000) children population.	Molecular psychiatry	Fu, Zening; Sui, Jing; Iraji, Armin; Liu, Jingyu; Calhoun, Vince D	February 1, 2025	Not Determined
39056908	Create Study	A Dynamic Entropy Approach Reveals Reduced Functional Network Connectivity Trajectory Complexity in Schizophrenia.	Entropy (Basel, Switzerland)	Blair, David Sutherland; Miller, Robyn L; Calhoun, Vince D	June 26, 2024	Not Determined
39045900	Create Study	4D dynamic spatial brain networks at rest linked to cognition show atypical variability and coupling in schizophrenia.	Human brain mapping	Pusuluri, Krishna; Fu, Zening; Miller, Robyn; Pearlson, Godfrey; Kochunov, Peter; Van Erp, Theo G M; Iraji, Armin; Calhoun, Vince D	August 1, 2024	Not Determined
39042541	Create Study	Constrained Independent Vector Analysis with Reference for Multi-Subject fMRI Analysis.	IEEE transactions on bio-medical engineering	Vu, Trung; Laport, Francisco; Yang, Hanlu; Calhoun, Vince D; Adal, Tulay	July 23, 2024	Not Determined
38982882	Create Study	Neuroimage Analysis Methods and Artificial Intelligence Techniques for Reliable Biomarkers and Accurate Diagnosis of Schizophrenia: Achievements Made by Chinese Scholars Around the Past Decade.	Schizophrenia bulletin	Du, Yuhui; Niu, Ju; Xing, Ying; Li, Bang; Calhoun, Vince D	July 9, 2024	Not Determined
38979316	Create Study	Providing context: Extracting non-linear and dynamic temporal motifs from brain activity.	bioRxiv : the preprint server for biology	Geenjaar, Eloy; Kim, Donghyun; Calhoun, Vince	June 27, 2024	Not Determined
38948857	Create Study	Static and Dynamic Cross-Network Functional Connectivity Shows Elevated Entropy in Schizophrenia Patients.	bioRxiv : the preprint server for biology	Maksymchuk, Natalia; Bustillo, Juan R; Mathalon, Daniel H; Preda, Adrian; Miller, Robyn L; Calhoun, Vince D	June 17, 2024	Not Determined
38915498	Create Study	Studying time-resolved functional connectivity via communication theory: on the complementary nature of phase synchronization and sliding window Pearson correlation.	bioRxiv : the preprint server for biology	Wiafe, Sir-Lord; Asante, Nana O; Calhoun, Vince D; Faghiri, Ashkan	November 22, 2024	Not Determined
38854031	Create Study	Multimodal Predictive Modeling: Scalable Imaging Informed Approaches to Predict Future Brain Health.	bioRxiv : the preprint server for biology	Ajith, Meenu; Spence, Jeffrey S; Chapman, Sandra B; Calhoun, Vince D	May 30, 2024	Not Determined
38853973	Create Study	A spatially constrained independent component analysis jointly informed by structural and functional network connectivity.	bioRxiv : the preprint server for biology	Fouladivanda, Mahshid; Iraji, Armin; Wu, Lei; van Erp, Theodorus G M; Belger, Aysenil; Hawamdeh, Faris; Pearlson, Godfrey D; Calhoun, Vince D	June 1, 2024	Not Determined
38798576	Create Study	Neurobiology-based Cognitive Biotypes Using Multi-scale Intrinsic Connectivity Networks in Psychotic Disorders.	medRxiv : the preprint server for health sciences	Andrés-Camazón, Pablo; Diaz-Caneja, Covadonga Martínez; Ballem, Ram; Chen, Jiayu; Calhoun, Vince D; Iraji, Armin	May 14, 2024	Not Determined
38670348	Create Study	The overlap across psychotic disorders: A functional network connectivity analysis.	International journal of psychophysiology : official journal of the International Organization of Psychophysiology	Dini, Hossein; Bruni, Luis E; Ramsøy, Thomas Z; Calhoun, Vince D; Sendi, Mohammad S E	July 1, 2024	Not Determined
38645216	Create Study	Analysis of Longitudinal Change Patterns in Developing Brain Using Functional and Structural Magnetic Resonance Imaging via Multimodal Fusion.	bioRxiv : the preprint server for biology	Saha, Rekha; Saha, Debbrata K; Fu, Zening; Duda, Marlena; Silva, Rogers F; Calhoun, Vince D	April 10, 2024	Not Determined
38562835	Create Study	Identifying EEG Biomarkers of Depression with Novel Explainable Deep Learning Architectures.	bioRxiv : the preprint server for biology	Ellis, Charles A; Sancho, Martina Lapera; Miller, Robyn L; Calhoun, Vince D	March 21, 2024	Not Determined
38559041	Create Study	A method for estimating dynamic functional network connectivity gradients (dFNG) from ICA captures smooth inter-network modulation.	bioRxiv : the preprint server for biology	Soleimani, Najme; Iraji, Armin; van Erp, Theo G M; Belger, Aysenil; Calhoun, Vince D	June 18, 2024	Not Determined
38496567	Create Study	Brain dynamics reflecting an intra-network brain state is associated with increased posttraumatic stress symptoms in the early aftermath of trauma.	Research square	Sendi, Mohammad; Fu, Zening; Harnett, Nathaniel; van Rooij, Sanne; Vergara, Victor; Pizzagalli, Diego; Daskalakis, Nikolaos; House, Stacey; Beaudoin, Francesca; An, Xinming; Neylan, Thomas; Clifford, Gari; Jovanovic, Tanja; Linnstaedt, Sarah; Germine, Laura; Bollen, Kenneth; Rauch, Scott; Haran, John; Storrow, Alan; Lewandowski, Christopher; Musey Jr, Paul; Hendry, Phyllis; Sheikh, Sophia; Jones, Christopher; Punches, Brittany; Swor, Robert; Gentile, Nina; Murty, Vishnu; Hudak, Lauren; Pascual, Jose; Seamon, Mark; Harris, Erica; Chang, Anna; Pearson, Claire; Peak, David; Merchant, Roland; Domeier, Robert; Rathlev, Niels; O'Neil, Brian; Sergot, Paulina; Sanchez, Leon; Bruce, Steven; Sheridan, John; Harte, Steven; Kessler, Ronald; Koenen, Karestan; McLean, Samuel; Stevens, Jennifer; Calhoun, Vince; Ressler, Kerry	March 8, 2024	Not Determined
38495909	Create Study	Explainable fuzzy clustering framework reveals divergent default mode network connectivity dynamics in schizophrenia.	Frontiers in psychiatry	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	January 1, 2024	Not Determined
38491231	Create Study	SMART (Splitting-Merging Assisted Reliable) Independent Component Analysis for Extracting Accurate Brain Functional Networks.	Neuroscience bulletin	He, Xingyu; Calhoun, Vince D; Du, Yuhui	July 1, 2024	Not Determined
38405889	Create Study	Identifying Reproducibly Important EEG Markers of Schizophrenia with an Explainable Multi-Model Deep Learning Approach.	bioRxiv : the preprint server for biology	Sancho, Martina Lapera; Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	February 13, 2024	Not Determined
38345949	Create Study	Learning Spatiotemporal Brain Dynamics in Adolescents via Multimodal MEG and fMRI Data Fusion Using Joint Tensor/Matrix Decomposition.	IEEE transactions on bio-medical engineering	Belyaeva, Irina; Gabrielson, Ben; Wang, Yu-Ping; Wilson, Tony W; Calhoun, Vince D; Stephen, Julia M; Adali, Tulay	July 1, 2024	Not Determined
38260417	Create Study	Cognitive and Psychiatric Relevance of Dynamic Functional Connectivity States in a Large (N>10,000) Children Population.	Research square	Fu, Zening; Sui, Jing; Iraji, Armin; Liu, Jingyu; Calhoun, Vince	January 12, 2024	Not Determined
38187601	Create Study	Evaluating Augmentation Approaches for Deep Learning-based Major Depressive Disorder Diagnosis with Raw Electroencephalogram Data.	bioRxiv : the preprint server for biology	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	December 18, 2023	Not Determined
38168319	Create Study	MARKOV SPATIAL FLOWS IN BOLD FMRI: A NOVEL LENS ON THE BOLD SIGNAL REVEALS ATTRACTING PATTERNS OF SIGNAL INTENSITY.	bioRxiv : the preprint server for biology	Miller, Robyn L; Vergara, Victor M; Erhardt, Erik B; Calhoun, Vince D	December 15, 2023	Not Determined
38151187	Create Study	Dynamic functional network connectivity based on spatial source phase maps of complex-valued fMRI data: Application to schizophrenia.	Journal of neuroscience methods	Li, Wei-Xing; Lin, Qiu-Hua; Zhao, Bin-Hua; Kuang, Li-Dan; Zhang, Chao-Ying; Han, Yue; Calhoun, Vince D	March 1, 2024	Not Determined
38083554	Create Study	A Convolutional Autoencoder-based Explainable Clustering Approach for Resting-State EEG Analysis.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	July 1, 2023	Not Determined
38083384	Create Study	How Does Aging Affect Whole-brain Functional Network Connectivity? Evidence from An ICA Method.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Du, Yuhui; Guo, Yating; Calhoun, Vince D	July 1, 2023	Not Determined
38083298	Create Study	Hyperlocal Spatial Flows in BOLD fMRI Expose Novel Brain-Based Correlates of Schizophrenia.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Miller, Robyn L; Vergara, Victor M; Calhoun, Vince D	July 1, 2023	Not Determined
38083012	Create Study	Neuropsychiatric Disorder Subtyping Via Clustered Deep Learning Classifier Explanations.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	July 1, 2023	Not Determined
38082903	Create Study	A Deep Learning Approach for Psychosis Spectrum Label Noise Detection from Multimodal Neuroimaging Data.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Rokham, Hooman; Falakshahi, Haleh; Calhoun, Vince D	July 1, 2023	Not Determined
38082649	Create Study	Functional and Structural Longitudinal Change Patterns in Adolescent Brain.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Saha, Rekha; Saha, Debbrata K; Fu, Zening; Silva, Rogers F; Calhoun, Vince D	July 1, 2023	Not Determined
38070846	Create Study	Spatial Dynamic Subspaces Encode Sex-Specific Schizophrenia Disruptions in Transient Network Overlap and Their Links to Genetic Risk.	Biological psychiatry	Iraji, Armin; Chen, Jiayu; Lewis, Noah; Faghiri, Ashkan; Fu, Zening; Agcaoglu, Oktay; Kochunov, Peter; Adhikari, Bhim M; Mathalon, Daniel H; Pearlson, Godfrey D; Macciardi, Fabio; Preda, Adrian; van Erp, Theo G M; Bustillo, Juan R; Díaz-Caneja, Covadonga M; Andrés-Camazón, Pablo; Dhamala, Mukesh; Adali, Tulay; Calhoun, Vince D	August 1, 2024	Not Determined
38014293	Create Study	CROSS-SAMPLING RATE TRANSFER LEARNING FOR ENHANCED RAW EEG DEEP LEARNING CLASSIFIER PERFORMANCE IN MAJOR DEPRESSIVE DISORDER DIAGNOSIS.	bioRxiv : the preprint server for biology	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	November 16, 2023	Not Determined
38014214	Create Study	COMPLEXITY MEASURES OF PSYCHOTIC BRAIN ACTIVITY IN THE FMRI SIGNAL.	bioRxiv : the preprint server for biology	Li, Qiang; Seraji, Masoud; Calhoun, Vince D; Iraji, Armin	November 15, 2023	Not Determined
37873255	Create Study	Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder via Transfer Learning with Single Channel Sleep Stage Data.	bioRxiv : the preprint server for biology	Ellis, Charles A; Sattiraju, Abhinav; Miller, Robyn L; Calhoun, Vince D	October 15, 2023	Not Determined
37787573	Create Study	Identifying canonical and replicable multi-scale intrinsic connectivity networks in 100k+ resting-state fMRI datasets.	Human brain mapping	Iraji, A; Fu, Z; Faghiri, A; Duda, M; Chen, J; Rachakonda, S; DeRamus, T; Kochunov, P; Adhikari, B M; Belger, A; Ford, J M; Mathalon, D H; Pearlson, G D; Potkin, S G; Preda, A; Turner, J A; van Erp, T G M; Bustillo, J R; Yang, K; Ishizuka, K; Faria, A; Sawa, A; Hutchison, K; Osuch, E A; Theberge, J; Abbott, C; Mueller, B A; Zhi, D; Zhuo, C; Liu, S; Xu, Y; Salman, M; Liu, J; Du, Y; Sui, J; Adali, T; Calhoun, V D	December 1, 2023	Not Determined
37769983	Create Study	A Brainwide Risk Score for Psychiatric Disorder Evaluated in a Large Adolescent Population Reveals Increased Divergence Among Higher-Risk Groups Relative to Control Participants.	Biological psychiatry	Yan, Weizheng; Pearlson, Godfrey D; Fu, Zening; Li, Xinhui; Iraji, Armin; Chen, Jiayu; Sui, Jing; Volkow, Nora D; Calhoun, Vince D	April 1, 2024	Not Determined
37745533	Create Study	Multimodal subspace independent vector analysis effectively captures the latent relationships between brain structure and function.	bioRxiv : the preprint server for biology	Li, Xinhui; Kochunov, Peter; Adali, Tulay; Silva, Rogers F; Calhoun, Vince D	October 22, 2024	Not Determined
37744210	Create Study	BrainForge: an online data analysis platform for integrative neuroimaging acquisition, analysis, and sharing.	Concurrency and computation : practice & experience	Verner, Eric; Petropoulos, Helen; Baker, Bradley; Bockholt, H Jeremy; Fries, Jill; Bohsali, Anastasia; Raja, Rajikha; Trinh, Duc Hoai; Calhoun, Vince	August 15, 2023	Not Determined
37645890	Create Study	Revealing Complex Functional Topology Brain Network Correspondences Between Humans and Marmosets.	bioRxiv : the preprint server for biology	Li, Qiang; Calhoun, Vince D; Iraji, Armin	November 28, 2023	Not Determined
37554634	Create Study	Psychopathic traits and altered resting-state functional connectivity in incarcerated adolescent girls.	Frontiers in neuroimaging	Allen, Corey H; Maurer, J Michael; Gullapalli, Aparna R; Edwards, Bethany G; Aharoni, Eyal; Harenski, Carla L; Anderson, Nathaniel E; Harenski, Keith A; Calhoun, Vince D; Kiehl, Kent A	January 1, 2023	Not Determined
37503085	Create Study	Spatial Dynamic Subspaces Encode Sex-Specific Schizophrenia Disruptions in Transient Network Overlap and its Links to Genetic Risk.	bioRxiv : the preprint server for biology	Iraji, A; Chen, J; Lewis, N; Faghiri, A; Fu, Z; Agcaoglu, O; Kochunov, P; Adhikari, B M; Mathalon, D H; Pearlson, G D; Macciardi, F; Preda, A; van Erp, T G M; Bustillo, J R; Díaz-Caneja, C M; Andrés-Camazón, P; Dhamala, M; Adali, T; Calhoun, V D	July 19, 2023	Not Determined
37461731	Create Study	Alterations in grey matter structure linked to frequency-specific cortico-subcortical connectivity in schizophrenia via multimodal data fusion.	bioRxiv : the preprint server for biology	Duda, Marlena; Faghiri, Ashkan; Belger, Aysenil; Bustillo, Juan R; Ford, Judith M; Mathalon, Daniel H; Mueller, Bryon A; Pearlson, Godfrey D; Potkin, Steven G; Preda, Adrian; Sui, Jing; Van Erp, Theo G M; Calhoun, Vince D	July 6, 2023	Not Determined
37398173	Create Study	An Explainable and Robust Deep Learning Approach for Automated Electroencephalography-based Schizophrenia Diagnosis.	bioRxiv : the preprint server for biology	Sattiraju, Abhinav; Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	October 30, 2023	Not Determined
37398050	Create Study	Improving Multichannel Raw Electroencephalography-based Diagnosis of Major Depressive Disorder by Pretraining Deep Learning Models with Single Channel Sleep Stage Data.	bioRxiv : the preprint server for biology	Ellis, Charles A; Sattiraju, Abhinav; Miller, Robyn L; Calhoun, Vince D	May 30, 2023	Not Determined
37300060	Create Study	A Scalable Approach to Independent Vector Analysis by Shared Subspace Separation for Multi-Subject fMRI Analysis.	Sensors (Basel, Switzerland)	Sun, Mingyu; Gabrielson, Ben; Akhonda, Mohammad Abu Baker Siddique; Yang, Hanlu; Laport, Francisco; Calhoun, Vince; Adali, Tülay	June 5, 2023	Not Determined
36991975	Create Study	Identification of Homogeneous Subgroups from Resting-State fMRI Data.	Sensors (Basel, Switzerland)	Yang, Hanlu; Vu, Trung; Long, Qunfang; Calhoun, Vince; Adali, Tülay	March 20, 2023	Not Determined
36965455	Create Study	Exploring the longitudinal associations of functional network connectivity and psychiatric symptom changes in youth.	NeuroImage. Clinical	Dall'Aglio, Lorenza; Estévez-López, Fernando; López-Vicente, Mónica; Xu, Bing; Agcaoglu, Oktay; Boroda, Elias; Lim, Kelvin O; Calhoun, Vince D; Tiemeier, Henning; Muetzel, Ryan L	January 1, 2023	Not Determined
36919656	Create Study	Evaluation of boundaries between mood and psychosis disorder using dynamic functional network connectivity (dFNC) via deep learning classification.	Human brain mapping	Rokham, Hooman; Falakshahi, Haleh; Fu, Zening; Pearlson, Godfrey; Calhoun, Vince D	June 1, 2023	Not Determined
36843049	Create Study	Fine temporal brain network structure modularizes and localizes differently in men and women: insights from a novel explainability framework.	Cerebral cortex (New York, N.Y. : 1991)	Lewis, Noah; Miller, Robyn; Gazula, Harshvardhan; Calhoun, Vince	May 9, 2023	Not Determined
36840728	Create Study	Reliability and clinical utility of spatially constrained estimates of intrinsic functional networks from very short fMRI scans.	Human brain mapping	Duda, Marlena; Iraji, Armin; Ford, Judith M; Lim, Kelvin O; Mathalon, Daniel H; Mueller, Bryon A; Potkin, Steven G; Preda, Adrian; Van Erp, Theo G M; Calhoun, Vince D	April 15, 2023	Not Determined
36824777	Create Study	Explainable Fuzzy Clustering Framework Reveals Divergent Default Mode Network Connectivity Dynamics in Schizophrenia.	bioRxiv : the preprint server for biology	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	February 14, 2023	Not Determined
36778353	Create Study	A Novel Explainable Fuzzy Clustering Approach for fMRI Dynamic Functional Network Connectivity Analysis.	bioRxiv : the preprint server for biology	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	January 31, 2023	Not Determined
36652974	Create Study	A method for estimating and characterizing explicitly nonlinear dynamic functional network connectivity in resting-state fMRI data.	Journal of neuroscience methods	Motlaghian, S M; Vahidi, V; Belger, A; Bustillo, J R; Faghiri, A; Ford, J M; Iraji, A; Lim, K; Mathalon, D H; Miller, R; Mueller, B A; O'Leary, D; Potkin, S G; Preda, A; van Erp, T G; Calhoun, V D	April 1, 2023	Not Determined
36652485	Create Study	Spontaneous cortical dynamics from the first years to the golden years.	Proceedings of the National Academy of Sciences of the United States of America	Rempe, Maggie P; Ott, Lauren R; Picci, Giorgia; Penhale, Samantha H; Christopher-Hayes, Nicholas J; Lew, Brandon J; Petro, Nathan M; Embury, Christine M; Schantell, Mikki; Johnson, Hallie J; Okelberry, Hannah J; Losh, Kathryn L; Willett, Madelyn P; Losh, Rebecca A; Wang, Yu-Ping; Calhoun, Vince D; Stephen, Julia M; Heinrichs-Graham, Elizabeth; Kurz, Max J; Wilson, Tony W	January 24, 2023	Not Determined
36629328	Create Study	Developmental and aging resting functional magnetic resonance imaging brain state adaptations in adolescents and adults: A large N (>47K) study.	Human brain mapping	Abrol, Anees; Fu, Zening; Du, Yuhui; Wilson, Tony W; Wang, Yu-Ping; Stephen, Julia M; Calhoun, Vince D	April 15, 2023	Not Determined
36337436	Create Study	Reproducibility in Matrix and Tensor Decompositions: Focus on Model Match, Interpretability, and Uniqueness.	IEEE signal processing magazine	Adali, Tülay; Kantar, Furkan; Akhonda, M A B Siddique; Strother, Stephen; Calhoun, Vince D; Acar, Evrim	July 1, 2022	Not Determined
36201411	Create Study	A Novel Neighborhood Rough Set-Based Feature Selection Method and Its Application to Biomarker Identification of Schizophrenia.	IEEE journal of biomedical and health informatics	Xing, Ying; Kochunov, Peter; van Erp, Theo G M; Ma, Tianzhou; Calhoun, Vince D; Du, Yuhui	January 1, 2023	Not Determined
36086310	Create Study	Spatially Constrained ICA Enables Robust Detection of Schizophrenia from Very Short Resting-state fMRI.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Duda, Marlena; Iraji, Armin; Calhoun, Vince D	July 1, 2022	Not Determined
36086046	Create Study	An ICA-based framework for joint analysis of cognitive scores and MEG event-related fields.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Boonyakitanont, P; Gabrielson, B; Belyaeva, I; Olikkal, P; Songsiri, J; Wang, Y P; Wilson, T W; Calhoun, V D; Stephen, J M; Adali, T	July 1, 2022	Not Determined
36085804	Create Study	A two-step clustering-based pipeline for big dynamic functional network connectivity data.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Sendi, Mohammad S E; Miller, Robyn L; Salat, David H; Calhoun, Vince D	July 1, 2022	Not Determined
36085722	Create Study	Discovery and Replication of Time-Resolved Functional Network Connectivity Differences in Adolescence and Adulthood in over 50K fMRI Datasets.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Abrol, Anees; Calhoun, Vince	July 1, 2022	Not Determined
36085717	Create Study	A 5D approach to study spatio-temporal dynamism of resting-state brain networks in schizophrenia.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Kazemivash, B; Calhoun, V D	July 1, 2022	Not Determined
36085708	Create Study	Functional Connectivity Stability: A Signature of Neurocognitive Development and Psychiatric Problems in Children.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Fu, Zening; Salman, Mustafa S; Liu, Jingyu; Calhoun, Vince D	July 1, 2022	Not Determined
36085657	Create Study	Transient Intervals of Significantly Different Whole Brain Connectivity Predict Recovery vs. Progression from Mild Cognitive Impairment: New Insights from Interpretable LSTM Classifiers.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Gao, Yutong; Calhoun, Vince D; Miller, Robyn L	July 1, 2022	Not Determined
36085610	Create Study	Default mode network dynamic functional network connectivity predicts psychotic symptom severity.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Sendi, Mohammad S E; Dini, Hossein; Bruni, Luis Emilio; Calhoun, Vince D	July 1, 2022	Not Determined
36001238	Create Study	Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data.	Neuroinformatics	Belyaeva, Irina; Gabrielson, Ben; Wang, Yu-Ping; Wilson, Tony W; Calhoun, Vince D; Stephen, Julia M; Adali, Tülay	January 1, 2023	Not Determined
35856915	Create Study	Reproducibility and replicability in neuroimaging data analysis.	Current opinion in neurology	Adali, Tü Lay; Calhoun, Vince D	August 1, 2022	Not Determined
35762454	Create Study	Nonlinear functional network connectivity in resting functional magnetic resonance imaging data.	Human brain mapping	Motlaghian, Sara M; Belger, Aysenil; Bustillo, Juan R; Ford, Judith M; Iraji, Armin; Lim, Kelvin; Mathalon, Daniel H; Mueller, Bryon A; O'Leary, Daniel; Pearlson, Godfrey; Potkin, Steven G; Preda, Adrian; van Erp, Theo G M; Calhoun, Vince D	October 15, 2022	Not Determined
35712676	Create Study	A Systematic Approach for Explaining Time and Frequency Features Extracted by Convolutional Neural Networks From Raw Electroencephalography Data.	Frontiers in neuroinformatics	Ellis, Charles A; Miller, Robyn L; Calhoun, Vince D	January 1, 2022	Not Determined
35709557	Create Study	Multimodal data fusion of cortical-subcortical morphology and functional network connectivity in psychotic spectrum disorder.	NeuroImage. Clinical	DeRamus, T P; Wu, L; Qi, S; Iraji, A; Silva, R; Du, Y; Pearlson, G; Mayer, A; Bustillo, J R; Stromberg, S F; Calhoun, V D	January 1, 2022	Not Determined
35700948	Create Study	A longitudinal study of functional connectome uniqueness and its association with psychological distress in adolescence.	NeuroImage	Shan, Zack Y; Mohamed, Abdalla Z; Schwenn, Paul; McLoughlin, Larisa T; Boyes, Amanda; Sacks, Dashiell D; Driver, Christina; Calhoun, Vince D; Lagopoulos, Jim; Hermens, Daniel F	September 1, 2022	Not Determined
35636737	Create Study	Eyes-closed versus eyes-open differences in spontaneous neural dynamics during development.	NeuroImage	Petro, Nathan M; Ott, Lauren R; Penhale, Samantha H; Rempe, Maggie P; Embury, Christine M; Picci, Giorgia; Wang, Yu-Ping; Stephen, Julia M; Calhoun, Vince D; Wilson, Tony W	September 1, 2022	Not Determined
35546891	Create Study	Tracing Evolving Networks Using Tensor Factorizations vs. ICA-Based Approaches.	Frontiers in neuroscience	Acar, Evrim; Roald, Marie; Hossain, Khondoker M; Calhoun, Vince D; Adali, Tülay	January 1, 2022	Not Determined
35484969	Create Study	A new multimodality fusion classification approach to explore the uniqueness of schizophrenia and autism spectrum disorder.	Human brain mapping	Du, Yuhui; He, Xingyu; Kochunov, Peter; Pearlson, Godfrey; Hong, L Elliot; van Erp, Theo G M; Belger, Aysenil; Calhoun, Vince D	August 15, 2022	Not Determined
35161969	Create Study	Association of Neuroimaging Data with Behavioral Variables: A Class of Multivariate Methods and Their Comparison Using Multi-Task FMRI Data.	Sensors (Basel, Switzerland)	Akhonda, M A B S; Levin-Schwartz, Yuri; Calhoun, Vince D; Adali, Tülay	February 5, 2022	Not Determined
34891937	Create Study	SMART (splitting-merging assisted reliable) Independent Component Analysis for Brain Functional Networks.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Du, Yuhui; He, Xingyu; Calhoun, Vince D	November 1, 2021	Not Determined
34891932	Create Study	A Transdiagnostic Biotype Detection Method for Schizophrenia and Autism Spectrum Disorder Based on Graph Kernel.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Du, Yuhui; Hao, Hui; Xing, Ying; Niu, Ju; Calhoun, Vince D	November 1, 2021	Not Determined
34891919	Create Study	A Method for Integrative Analysis of Local and Global Brain Dynamics.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Miller, Robyn L; Vergara, Victor M; Calhoun, Vince D	November 1, 2021	Not Determined
34891548	Create Study	Evidence for Transcranial Magnetic Stimulation Induced Functional Connectivity Oscillations in the Brain.	Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Annual International Conference	Vergara, Victor M; Rafiei, Farshad; Wokke, Martijn E; Lau, Hakwan; Rahnev, Dobromir; Calhoun, Vince D	November 1, 2021	Not Determined
34861391	Create Study	A dynamic graph convolutional neural network framework reveals new insights into connectome dysfunctions in ADHD.	NeuroImage	Zhao, Kanhao; Duka, Boris; Xie, Hua; Oathes, Desmond J; Calhoun, Vince; Zhang, Yu	February 1, 2022	Not Determined
34694992	Create Study	Low-Rank Tucker-2 Model for Multi-Subject fMRI Data Decomposition With Spatial Sparsity Constraint.	IEEE transactions on medical imaging	Han, Yue; Lin, Qiu-Hua; Kuang, Li-Dan; Gong, Xiao-Feng; Cong, Fengyu; Wang, Yu-Ping; Calhoun, Vince D	March 1, 2022	Not Determined
34561516	Create Study	Functional network connectivity during Jazz improvisation.	Scientific reports	Vergara, Victor M; Norgaard, Martin; Miller, Robyn; Beaty, Roger E; Dhakal, Kiran; Dhamala, Mukesh; Calhoun, Vince D	September 24, 2021	Not Determined
34054110	Create Study	Data-driven approaches to neuroimaging biomarkers for neurological and psychiatric disorders: emerging approaches and examples.	Current opinion in neurology	Calhoun, Vince D; Pearlson, Godfrey D; Sui, Jing	August 1, 2021	Not Determined
33957159	Create Study	Disjoint subspaces for common and distinct component analysis: Application to the fusion of multi-task FMRI data.	Journal of neuroscience methods	Akhonda, M A B S; Gabrielson, Ben; Bhinge, Suchita; Calhoun, Vince D; Adali, Tülay	July 1, 2021	Not Determined
33951454	Create Study	Modular and state-relevant functional network connectivity in high-frequency eyes open vs eyes closed resting fMRI data.	Journal of neuroscience methods	DeRamus, Thomas; Faghiri, Ashkan; Iraji, Armin; Agcaoglu, Oktay; Vergara, Victor; Fu, Zening; Silva, Rogers; Gazula, Harshvardhan; Stephen, Julia; Wilson, Tony W; Wang, Yu-Ping; Calhoun, Vince	July 1, 2021	Not Determined
33948898	Create Study	NeuroCrypt: Machine Learning Over Encrypted Distributed Neuroimaging Data.	Neuroinformatics	Senanayake, Nipuna; Podschwadt, Robert; Takabi, Daniel; Calhoun, Vince D; Plis, Sergey M	January 1, 2022	Not Determined
33032665	Create Study	Reliability of the NIH toolbox cognitive battery in children and adolescents: a 3-year longitudinal examination.	Psychological medicine	Taylor, Brittany K; Frenzel, Michaela R; Eastman, Jacob A; Wiesman, Alex I; Wang, Yu-Ping; Calhoun, Vince D; Stephen, Julia M; Wilson, Tony W	July 1, 2022	Not Determined
32841133	Create Study	Multi-Paradigm fMRI Fusion via Sparse Tensor Decomposition in Brain Functional Connectivity Study.	IEEE journal of biomedical and health informatics	Zhang, Yipu; Xiao, Li; Zhang, Gemeng; Cai, Biao; Stephen, Julia M; Wilson, Tony W; Calhoun, Vince D; Wang, Yu-Ping	May 1, 2021	Not Determined
32715898	Create Study	Sex-related differences in brain dynamism at rest as neural correlates of positive and negative valence system constructs.	Cognitive neuroscience	de Lacy, Nina; Kutz, J Nathan; Calhoun, Vince D	July 1, 2021	Not Determined

helpcenter.collection.publications-tab

Collection - Publications

The number of Publications is displayed in parentheses next to the tab name. Clicking on any of the Publication Titles will open the Publication in a new internet browsing tab.

Collection Owners, Program Officers, and users with Submission or Administrative Privileges for the Collection may mark a publication as either Relevant or Not Relevant in the Status column.

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How can I determine if a publication is relevant?

Publications are considered relevant to a collection when the data shared is directly related to the project or collection.
Where does the NDA get the publications?

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A link to the Create an NDA Study page that can be clicked to start creating an NDA Study with information such as the title, journal and authors automatically populated.
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Indicates that the publication has not yet been reviewed and/or marked as Relevant or Not Relevant so it has not been determined whether an NDA Study is expected.
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A publication that is not based on data related to the aims of the grant/project associated with the Collection or not based on any data such as a review article and, therefore, an NDA Study is not expected to be created.
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PubMed ID

The PUBMed ID is the unique ID number for the publication as recorded in the PubMed database.
Relevant Publication

A publication that is based on data related to the aims of the grant/project associated with the Collection and, therefore, an NDA Study is expected to be created.

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Data Expected List: Mandatory Data Structures

These data structures are mandatory for your NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

For NIMH HIV-related research that involves human research participants: Select the dictionary or dictionaries most appropriate for your research. If your research does not require all three data dictionaries, just ignore the ones you do not need. There is no need to delete extra data dictionaries from your NDA Collection. You can adjust the Targeted Enrollment column in the Data Expected tab to “0” for those unnecessary data dictionaries. At least one of the three data dictionaries must have a non-zero value.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
Research Subject and Pedigree	1	01/15/2022	0	05/15/2022	0	Approved

To create your project's Data Expected list, use the "+New Data Expected" to add or request existing structures and to request new Data Structures that are not in the NDA Data Dictionary.

If the Structure you need already exists, locate it and specify your dates and enrollment when adding it to your Data Expected list. If you require changes to the Structure you need, select the indicator stating "No, it requires changes to meet research needs," and upload a file containing your requested changes.

If the structure you need is not yet defined in the Data Dictionary, you can select "Upload Definition" and attach the necessary materials to request its creation.

When selecting the expected dates for your data, make sure to follow the standard Data Sharing Regimen and choose dates within the date ranges that correspond to your project start and end dates.

Please visit the Completing Your Data Expected Tutorial for more information.

Data Expected List: Data Structures per Research Aims

These data structures are specific to your research aims and should list all data structures in which data will be collected and submitted for this NDA Collection. Please update the Targeted Enrollment number to accurately represent the number of subjects you expect to submit for the entire study.

Data Expected	Targeted Enrollment	Initial Submission	Subjects Submitted	Initial Share	Subjects Shared	Status
Imaging (Structural, fMRI, DTI, PET, microscopy)	60	05/20/2024	21	10/20/2024	21	Approved

Structure not yet defined

No Status history for this Data Expected has been recorded yet

helpcenter.collection.data-expected-tab

Collection - Data Expected

The Data Expected tab displays the list of all data that NDA expects to receive in association with the Collection as defined by the contributing researcher, as well as the dates for the expected initial upload of the data, and when it is first expected to be shared, or with the research community. Above the primary table of Data Expected, any publications determined to be relevant to the data within the Collection are also displayed - members of the contributing research group can use these to define NDA Studies, connecting those papers to underlying data in NDA.

The tab is used both as a reference for those accessing shared data, providing information on what is expected and when it will be shared, and as the primary tracking mechanism for contributing projects. It is used by both contributing primary researchers, secondary researchers, and NIH Program and Grants Management staff.

Researchers who are starting their project need to update their Data Expected list to include all the Data Structures they are collecting under their grant and set their initial submission and sharing schedule according to the NDA Data Sharing Regimen.

To add existing Data Structures from the Data Dictionary, to request new Data Structure that are not in the Dictionary, or to request changes to existing Data Structures, click "+New Data Expected".

For step-by-step instructions on how to add existing Data Structures, request changes to an existing Structure, or request a new Data Structure, please visit the Completing Your Data Expected Tutorial.

If you are a contributing researcher creating this list for the first time, or making changes to the list as your project progress, please note the following:

Although items you add to the list and changes you make are displayed, they are not committed to the system until you Save the entire page using the "Save" button at the bottom of your screen. Please Save after every change to ensure none of your work is lost.
If you attempt to add a new structure, the title you provide must be unique - if another structure exists with the same name your change will fail.
Adding a new structure to this list is the only way to request the creation of a new Data Dictionary definition.

Frequently Asked Questions

What is an NDA Data Structure?

An NDA Data Structure is comprised of multiple Data Elements to make up an electronic definition of an assessment, measure, questionnaire, etc will have a corresponding Data Structure.
What is the NDA Data Dictionary?

The NDA Data Dictionary is comprised of electronic definitions known as Data Structures.

Glossary

Analyzed Data

Data specific to the primary aims of the research being conducted (e.g. outcome measures, other dependent variables, observations, laboratory results, analyzed images, volumetric data, etc.) including processed images.
Data Item

Items listed on the Data Expected list in the Collection which may be an individual and discrete Data Structure, Data Structure Category, or Data Structure Group.
Data Structure

A defined organization and group of Data Elements to represent an electronic definition of a measure, assessment, questionnaire, or collection of data points. Data structures that have been defined in the NDA Data Dictionary are available at https://nda.nih.gov/general-query.html?q=query=data-structure
Data Structure Category

An NDA term describing the affiliation of a Data Structure to a Category, which may be disease/disorder or diagnosis related (Depression, ADHD, Psychosis), specific to data type (MRI, eye tracking, omics), or type of data (physical exam, IQ).
Data Structure Group

A Data Item listed on the Data Expected tab of a Collection that indicates a group of Data Structures (e.g., ADOS or SCID) for which data may be submitted instead of a specific Data Structure identified by version, module, edition, etc. For example, the ADOS Data Structure Category includes every ADOS Data Structure such as ADOS Module 1, ADOS Module 2, ADOS Module 1 - 2nd Edition, etc. The SCID Data Structure Group includes every SCID Data Structure such as SCID Mania, SCID V Mania, SCID PTSD, SCID-V Diagnosis, and more.
Evaluated Data

A new Data Structure category, Evaluated Data is analyzed data resulting from the use of computational pipelines in the Cloud and can be uploaded directly back to a miNDAR database. Evaluated Data is expected to be listed as a Data Item in the Collection's Data Expected Tab.
Imaging Data

Imaging+ is an NDA term which encompasses all imaging related data including, but not limited to, images (DTI, MRI, PET, Structural, Spectroscopy, etc.) as well as neurosignal data (EEG, fMRI, MEG, EGG, eye tracking, etc.) and Evaluated Data.
Initial Share Date

Initial Submission and Initial Share dates should be populated according to the NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data will be shared with authorized users upon publication (via an NDA Study) or 1-2 years after the grant end date specified on the first Notice of Award, as defined in the applicable Data Sharing Terms and Conditions.
Initial Submission Date

Initial Submission and Initial Share dates should be populated according to these NDA Data Sharing Terms and Conditions. Any modifications to these will go through the approval processes outlined above. Data for all subjects is not expected on the Initial Submission Date and modifications may be made as necessary based on the project's conduct.
Research Subject and Pedigree

An NDA created Data Structure used to convey basic information about the subject such as demographics, pedigree (links family GUIDs), diagnosis/phenotype, and sample location that are critical to allow for easier querying of shared data.
Submission Cycle

The NDA has two Submission Cycles per year - January 15 and July 15.
Submission Exemption

An interface to notify NDA that data may not be submitted during the upcoming/current submission cycle.

Contact NDA Help Desk

Collection Owners and those with Collection Administrator permission, may edit a collection. The following is currently available for Edit on this page:

Associated Studies

Studies that have been defined using data from a Collection are important criteria to determine the value of data shared. The number of subjects column displays the counts from this Collection that are included in a Study, out of the total number of subjects in that study. The Data Use column represents whether or not the study is a primary analysis of the data or a secondary analysis. State indicates whether the study is private or shared with the research community.

Study NameFilter by Study Name	AbstractFilter by Abstract	Collection/Study SubjectsFilter by Collection/Study Subjects	Data UsageFilter by Data Usage	StateFilter by State
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helpcenter.collection.associated-studies-tab

Collection - Associated Studies

Clicking on the Study Title will open the study details in a new internet browser tab. The Abstract is available for viewing, providing the background explanation of the study, as provided by the Collection Owner.

Primary v. Secondary Analysis: The Data Usage column will have one of these two choices. An associated study that is listed as being used for Primary Analysis indicates at least some and potentially all of the data used was originally collected by the creator of the NDA Study. Secondary Analysis indicates the Study owner was not involved in the collection of data, and may be used as supporting data.

Private v. Shared State: Studies that remain private indicate the associated study is only available to users who are able to access the collection. A shared study is accessible to the general public.

Frequently Asked Questions

How do I associate a study to my collection?

Studies are associated to the Collection automatically when the data is defined in the Study.

Glossary

Associated Studies Tab

A tab in a Collection that lists the NDA Studies that have been created using data from that Collection including both Primary and Secondary Analysis NDA Studies.

Contact NDA Help Desk

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